Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14i01
(673 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein. 83 7e-16
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 83 7e-16
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 83 7e-16
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 83 7e-16
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 83 7e-16
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 83 7e-16
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 83 7e-16
BC111958-1|AAI11959.1| 710|Homo sapiens ral guanine nucleotide ... 32 1.6
BC101756-1|AAI01757.1| 710|Homo sapiens ral guanine nucleotide ... 32 1.6
BC034491-1|AAH34491.1| 406|Homo sapiens chromosome 12 open read... 32 1.6
BC027600-1|AAH27600.1| 406|Homo sapiens chromosome 12 open read... 32 1.6
BC026075-1|AAH26075.1| 406|Homo sapiens chromosome 12 open read... 32 1.6
BC024183-1|AAH24183.1| 406|Homo sapiens chromosome 12 open read... 32 1.6
AK074082-1|BAB84908.1| 497|Homo sapiens FLJ00153 protein protein. 32 1.6
>BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein.
Length = 475
Score = 83.4 bits (197), Expect = 7e-16
Identities = 46/74 (62%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = -1
Query: 673 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP 494
R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G
Sbjct: 402 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGT 460
Query: 493 --TFQEEGGDDDLY 458
+ E DDDLY
Sbjct: 461 GGSVYTEDNDDDLY 474
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 83.4 bits (197), Expect = 7e-16
Identities = 46/74 (62%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = -1
Query: 673 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP 494
R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G
Sbjct: 733 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGT 791
Query: 493 --TFQEEGGDDDLY 458
+ E DDDLY
Sbjct: 792 GGSVYTEDNDDDLY 805
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 83.4 bits (197), Expect = 7e-16
Identities = 46/74 (62%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = -1
Query: 673 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP 494
R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G
Sbjct: 733 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGT 791
Query: 493 --TFQEEGGDDDLY 458
+ E DDDLY
Sbjct: 792 GGSVYTEDNDDDLY 805
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 83.4 bits (197), Expect = 7e-16
Identities = 46/74 (62%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = -1
Query: 673 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP 494
R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G
Sbjct: 571 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGT 629
Query: 493 --TFQEEGGDDDLY 458
+ E DDDLY
Sbjct: 630 GGSVYTEDNDDDLY 643
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 83.4 bits (197), Expect = 7e-16
Identities = 46/74 (62%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = -1
Query: 673 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP 494
R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G
Sbjct: 733 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGT 791
Query: 493 --TFQEEGGDDDLY 458
+ E DDDLY
Sbjct: 792 GGSVYTEDNDDDLY 805
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 83.4 bits (197), Expect = 7e-16
Identities = 46/74 (62%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = -1
Query: 673 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP 494
R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G
Sbjct: 733 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGT 791
Query: 493 --TFQEEGGDDDLY 458
+ E DDDLY
Sbjct: 792 GGSVYTEDNDDDLY 805
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 83.4 bits (197), Expect = 7e-16
Identities = 46/74 (62%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = -1
Query: 673 RAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP 494
R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G
Sbjct: 733 RDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGT 791
Query: 493 --TFQEEGGDDDLY 458
+ E DDDLY
Sbjct: 792 GGSVYTEDNDDDLY 805
>BC111958-1|AAI11959.1| 710|Homo sapiens ral guanine nucleotide
dissociation stimulator-like 3 protein.
Length = 710
Score = 32.3 bits (70), Expect = 1.6
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 501 TSPRSRRR-GVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWRLAPAGS 328
+SPR RRR +T +AKL + S + SV P P++P R APAGS
Sbjct: 511 SSPRIRRRISLTKRLSAKLAREKSSSPSGSPGDPSSPTSSVSPGSPPSSPRSRDAPAGS 569
>BC101756-1|AAI01757.1| 710|Homo sapiens ral guanine nucleotide
dissociation stimulator-like 3 protein.
Length = 710
Score = 32.3 bits (70), Expect = 1.6
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 501 TSPRSRRR-GVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWRLAPAGS 328
+SPR RRR +T +AKL + S + SV P P++P R APAGS
Sbjct: 511 SSPRIRRRISLTKRLSAKLAREKSSSPSGSPGDPSSPTSSVSPGSPPSSPRSRDAPAGS 569
>BC034491-1|AAH34491.1| 406|Homo sapiens chromosome 12 open reading
frame 12 protein.
Length = 406
Score = 32.3 bits (70), Expect = 1.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 364 GATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRR-HPPPPGTWAGRPLKYPCPL*LPR 540
G R+ +Q G +W P V S + C G PPPPG W K+PCP+ + R
Sbjct: 61 GPPRKQPKQQHGPG---FWFQPPVCSN--WGCWGGPWRPPPPGFW-----KFPCPVQVFR 110
Query: 541 LLGI 552
+ G+
Sbjct: 111 VYGL 114
>BC027600-1|AAH27600.1| 406|Homo sapiens chromosome 12 open reading
frame 12 protein.
Length = 406
Score = 32.3 bits (70), Expect = 1.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 364 GATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRR-HPPPPGTWAGRPLKYPCPL*LPR 540
G R+ +Q G +W P V S + C G PPPPG W K+PCP+ + R
Sbjct: 61 GPPRKQPKQQHGPG---FWFQPPVCSN--WGCWGGPWRPPPPGFW-----KFPCPVQVFR 110
Query: 541 LLGI 552
+ G+
Sbjct: 111 VYGL 114
>BC026075-1|AAH26075.1| 406|Homo sapiens chromosome 12 open reading
frame 12 protein.
Length = 406
Score = 32.3 bits (70), Expect = 1.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 364 GATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRR-HPPPPGTWAGRPLKYPCPL*LPR 540
G R+ +Q G +W P V S + C G PPPPG W K+PCP+ + R
Sbjct: 61 GPPRKQPKQQHGPG---FWFQPPVCSN--WGCWGGPWRPPPPGFW-----KFPCPVQVFR 110
Query: 541 LLGI 552
+ G+
Sbjct: 111 VYGL 114
>BC024183-1|AAH24183.1| 406|Homo sapiens chromosome 12 open reading
frame 12 protein.
Length = 406
Score = 32.3 bits (70), Expect = 1.6
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 364 GATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRR-HPPPPGTWAGRPLKYPCPL*LPR 540
G R+ +Q G +W P V S + C G PPPPG W K+PCP+ + R
Sbjct: 61 GPPRKQPKQQHGPG---FWFQPPVCSN--WGCWGGPWRPPPPGFW-----KFPCPVQVFR 110
Query: 541 LLGI 552
+ G+
Sbjct: 111 VYGL 114
>AK074082-1|BAB84908.1| 497|Homo sapiens FLJ00153 protein protein.
Length = 497
Score = 32.3 bits (70), Expect = 1.6
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 501 TSPRSRRR-GVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWRLAPAGS 328
+SPR RRR +T +AKL + S + SV P P++P R APAGS
Sbjct: 308 SSPRIRRRISLTKRLSAKLAREKSSSPSGSPGDPSSPTSSVSPGSPPSSPRSRDAPAGS 366
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,113,840
Number of Sequences: 237096
Number of extensions: 2031312
Number of successful extensions: 9071
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9060
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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