Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14h23
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    46   4e-07
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    46   4e-07
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
 Frame = -1

Query: 648 KYTSLSGALKSIYKAEGLRGLSCGLGPTLARDAPFSGLYLMFYTQTKQAVPKEWLQSPSA 469
           ++T L   L  I+KA+G+ GL  G G ++     +   Y  FY   +  +P         
Sbjct: 155 EFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLP----DPKKT 210

Query: 468 ASAIHFSCGIVAGIAASLATNPADVLKTKMQLYPDK------FPNAFSAAVYIHQTYGIK 307
              I +    V    A + + P D ++ +M +   +      + +       I++T G  
Sbjct: 211 PFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGN 270

Query: 306 GYFKGAVPRMLRRTLMAAMAWTVFEEI 226
            +FKGA   +LR T   A+   +++EI
Sbjct: 271 AFFKGAFSNILRGT-GGALVLVLYDEI 296


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
 Frame = -1

Query: 648 KYTSLSGALKSIYKAEGLRGLSCGLGPTLARDAPFSGLYLMFYTQTKQAVPKEWLQSPSA 469
           ++T L   L  I+KA+G+ GL  G G ++     +   Y  FY   +  +P         
Sbjct: 155 EFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLP----DPKKT 210

Query: 468 ASAIHFSCGIVAGIAASLATNPADVLKTKMQLYPDK------FPNAFSAAVYIHQTYGIK 307
              I +    V    A + + P D ++ +M +   +      + +       I++T G  
Sbjct: 211 PFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGN 270

Query: 306 GYFKGAVPRMLRRTLMAAMAWTVFEEI 226
            +FKGA   +LR T   A+   +++EI
Sbjct: 271 AFFKGAFSNILRGT-GGALVLVLYDEI 296


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  CILNINKNPYLQTIQLYKIKVK 103
           C+LNI K+P   T+ ++  K++
Sbjct: 487 CLLNIQKSPRTLTLGIFAEKLR 508


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 277 HPGYGTFEIPFNSVRLMD 330
           +P YGTF I  ++  LMD
Sbjct: 229 YPPYGTFNIKGDTFDLMD 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,900
Number of Sequences: 438
Number of extensions: 4802
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)