Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14h12
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.80 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.80 
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   3.2  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   3.2  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   3.2  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   3.2  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   3.2  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   3.2  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   3.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.7  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNY 496
           ISSL   Y    + N++N Y  +Y+ NY
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNNNYNNNY 109


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNY 496
           ISSL   Y    + N++N Y  +Y+ NY
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNNNYNNNY 109


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNYFASVPTIVQ 469
           ISSL   Y    + N++N Y  +Y +  + ++  I Q
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQ 118


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNYFASVPTIVQ 469
           ISSL   Y    + N++N Y  +Y +  + ++  I Q
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQ 118


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNYFASVPTIVQ 469
           ISSL   Y    + N++N Y  +Y +  + ++  I Q
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQ 118


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNYFASVPTIVQ 469
           ISSL   Y    + N++N Y  +Y +  + ++  I Q
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQ 118


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNYFASVPTIVQ 469
           ISSL   Y    + N++N Y  +Y +  + ++  I Q
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQ 118


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNYFASVPTIVQ 469
           ISSL   Y    + N++N Y  +Y +  + ++  I Q
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQ 118


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 579 ISSLKPLYLNDIFVNFSNEYAVDYDRNYFASVPTIVQ 469
           ISSL   Y    + N++N Y  +Y +  + ++  I Q
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQ 118


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 540 VNFSNEYAVDYDRNYFASVPTIVQK 466
           V +SN+ A ++DR+       +VQK
Sbjct: 474 VIWSNDLATEHDRSVMIQAIRVVQK 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,939
Number of Sequences: 438
Number of extensions: 2892
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)