Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14h06
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 46 4e-06
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 43 4e-05
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 40 5e-04
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 31 0.12
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 30 0.28
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 29 0.49
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 27 2.6
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 3.5
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 26 4.6
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 26 6.0
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 26 6.0
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 8.0
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.0
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 46.4 bits (105), Expect = 4e-06
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Frame = -2
Query: 686 IXVVVNNAAVSLENSLEGIRRLVDINVT-ALVMSTLKAIEIMRVDK-------TGKGGTI 531
I V++NNA ++L G +++D+N+ A+ M T + +M + + + G I
Sbjct: 86 IDVLINNAGLAL-----GTDKVIDLNIDDAVTMITTNVLGMMAMTRAVLPIFYSKNKGDI 140
Query: 530 INISSIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTD 360
+N+ SIA + + VYC TKSA+ QF++ + K+ T +R++ V G +T+
Sbjct: 141 LNVGSIAGRESYVGGS-VYCSTKSALAQFTSALRKETI--DTRIRIMEVDPGLVETE 194
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 43.2 bits (97), Expect = 4e-05
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Frame = -2
Query: 692 GYIXVVVNNAAVSLEN-----SLEGIRRLVDINVTALVMSTLKAIEIMRVDKTGKGGTII 528
G + +V+NNA L ++E + R +++N + T +A+ +MR ++GKGG I+
Sbjct: 74 GNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYITKEALNLMR--ESGKGGRIL 131
Query: 527 NISSIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQ 423
ISS+A P + +Y +K AV S I ++
Sbjct: 132 QISSVAGYYP-SPCLSMYNASKFAVEGLSQTIMRE 165
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 39.5 bits (88), Expect = 5e-04
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Frame = -2
Query: 692 GYIXVVVNNAAVS-LENSLEGIR-RLVDINVTALVMSTLKAIEIMRVDKTGKGGTIINIS 519
G+I V+VNN A + S+E I D+ + S + + G +I+N S
Sbjct: 120 GWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAA-ISHMKSGSSIVNCS 178
Query: 518 SIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTDLV 354
SI A P + Y TK A+ F+ + Q +++ G+RV V GP T LV
Sbjct: 179 SINAYVGR-PDLLDYTSTKGAITAFTRGLSNQ--YAQHGIRVNAVAPGPIYTPLV 230
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 31.5 bits (68), Expect = 0.12
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 4/151 (2%)
Frame = -2
Query: 677 VVNNAAVSLENSLEGIRRLVDINVTALVMSTLKAIEIMRVDKTGKGGTIINISSIAAL-- 504
VV + A + N I V+++ TA ++ + + + T G + N + + +
Sbjct: 73 VVIHTASPVHNLARDIYFEVNVDGTANIIKACQKFNVDALVYTSSAGVVFNGADLINVDE 132
Query: 503 KQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTDLVPLMINI--DD 330
Q P V + +S L + KT + +GP D LVP M+++ +
Sbjct: 133 SQPIPEVHMDAYNESKALAEKQVLEASSESLKTAALRVAGLFGPGDRQLVPGMLSVLKNG 192
Query: 329 SINPEIRSNIDAQKLQTAESAARGLLEAYKN 237
++ N++ E+AA L A N
Sbjct: 193 QTKFQLGDNLNLFDFTYIENAAYAHLLAMDN 223
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 30.3 bits (65), Expect = 0.28
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = -2
Query: 569 IMRVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVI 390
I +D + GT+ S+ +K + + VY G+ + +C+ Q+ F TG
Sbjct: 335 ITSLDFSHPFGTLATASTDKTVKVWDMAGVVYLGSLKGHSDYVSCLAIQDSFIATGSMDT 394
Query: 389 TVCYGPTDTDLVPLMINIDDSINPEIRSNID-AQKLQTAESA 267
TV D D++ +++S+N +D A + T+ +A
Sbjct: 395 TVRLWNLDNDVLHKDNPVEESLNSPPDQPVDNATNVLTSHTA 436
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 29.5 bits (63), Expect = 0.49
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -2
Query: 692 GYIXVVVNNAAVSLENSLEGI-RRLVDINVTALVMSTL--KAIEIMRVDKTGKGGTIINI 522
G I V++NNA ++ + E + D +V+ ++ + I + K GKGG+I+NI
Sbjct: 72 GPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAKQGKGGSIVNI 131
Query: 521 SSI 513
S+
Sbjct: 132 GSV 134
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 326 INPEIRSNIDAQKLQTAESAARGLLEAYKN--GASGSTWLVFD 204
+NP+ S AQ LQ SAA GL + K+ G +G+T ++ D
Sbjct: 5 LNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVD 47
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 563 RVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQ-FSNCIGKQEYFSKTGVRVIT 387
++DK +G I NISS+ + F S F + +L F + F VRV
Sbjct: 746 KIDKDDEGFAITNISSVHKMPSFVLSYFSDLAASNRILTGFDRVLQLLPSFYDIPVRVRN 805
Query: 386 VCY 378
V Y
Sbjct: 806 VQY 808
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.6
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = -2
Query: 395 VITVCYGPTDTDLVPLMINIDDSINPEIRSNIDAQKLQTAESAARGLLEAYKNGASGSTW 216
+I +G LVPLMI D P + +N L A L+ A G W
Sbjct: 77 IIPALFGAFGNYLVPLMIGAPDVAYPRV-NNFTFWLLPPALMLL--LISALTEEGPGGGW 133
Query: 215 LVFDSKVTEITSNIDRAYDI 156
V+ ++ ITS+ A D+
Sbjct: 134 TVY-PPLSSITSHSGPAIDL 152
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 434 IGKQEYFSKTGVRVITVCY 378
+G E++ + VRVI VCY
Sbjct: 90 VGMNEFYYQVAVRVIEVCY 108
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 599 RR*HLCQLVFEYLQENFPTKQQR-YSQLXQYN 691
R+ +L FE+L++NF + QR YS++ ++N
Sbjct: 350 RKPNLQTYFFEFLKKNFCDENQRFYSEVCEFN 381
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -2
Query: 467 TKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTDLVPLMINIDDSI 324
T+ Q N + K F +R I V +DT PL++++ D +
Sbjct: 97 TRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIV 144
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -2
Query: 221 TWLVFDSKVTEITSNIDRAYDIMSENFTK*FRVL 120
TW++ ++ + SN +Y++ N+T R+L
Sbjct: 190 TWMITENLINSEPSNSSFSYEVQPSNYTTFCRML 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,502
Number of Sequences: 5004
Number of extensions: 55002
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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