Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14g24
(632 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009858-1|AAH09858.1| 311|Homo sapiens mitochondrial ribosomal... 120 6e-27
AY007152-1|AAG02005.1| 211|Homo sapiens protein ( Homo sapiens ... 120 6e-27
AF132962-1|AAD27737.1| 311|Homo sapiens CGI-28 protein protein. 120 6e-27
AB049635-1|BAB40840.1| 311|Homo sapiens mitochondrial ribosomal... 120 6e-27
BC000756-1|AAH00756.1| 263|Homo sapiens mitochondrial ribosomal... 87 4e-17
U18671-1|AAA98760.1| 851|Homo sapiens Stat2 protein. 31 2.6
BC051284-1|AAH51284.1| 851|Homo sapiens signal transducer and a... 31 2.6
BC006092-1|AAH06092.1| 577|Homo sapiens Unknown (protein for IM... 31 2.6
AY525126-1|AAS00091.1| 851|Homo sapiens signal transducer and a... 31 2.6
>BC009858-1|AAH09858.1| 311|Homo sapiens mitochondrial ribosomal
protein L4 protein.
Length = 311
Score = 120 bits (288), Expect = 6e-27
Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Frame = -2
Query: 631 SHFFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLELPTDESQYLVDLIENRNWGPSVLII 452
S+++MLP +R GL L+ KLAQDDLHI+ LELPT + QYL +L R WG SVL++
Sbjct: 160 SYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLV 219
Query: 451 DDT-DYAPRNITAATDNLLHVNIMPVYGLNVYSMLKHDTLVLTQAAAEKIEEKLLY 287
D T + P++I AT L N++P GLNV+SMLKH TLVLT +E+KLL+
Sbjct: 220 DLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLW 275
>AY007152-1|AAG02005.1| 211|Homo sapiens protein ( Homo sapiens
clone CDABP0091 mRNA sequence. ).
Length = 211
Score = 120 bits (288), Expect = 6e-27
Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Frame = -2
Query: 631 SHFFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLELPTDESQYLVDLIENRNWGPSVLII 452
S+++MLP +R GL L+ KLAQDDLHI+ LELPT + QYL +L R WG SVL++
Sbjct: 60 SYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLV 119
Query: 451 DDT-DYAPRNITAATDNLLHVNIMPVYGLNVYSMLKHDTLVLTQAAAEKIEEKLLY 287
D T + P++I AT L N++P GLNV+SMLKH TLVLT +E+KLL+
Sbjct: 120 DLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLW 175
>AF132962-1|AAD27737.1| 311|Homo sapiens CGI-28 protein protein.
Length = 311
Score = 120 bits (288), Expect = 6e-27
Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Frame = -2
Query: 631 SHFFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLELPTDESQYLVDLIENRNWGPSVLII 452
S+++MLP +R GL L+ KLAQDDLHI+ LELPT + QYL +L R WG SVL++
Sbjct: 160 SYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLV 219
Query: 451 DDT-DYAPRNITAATDNLLHVNIMPVYGLNVYSMLKHDTLVLTQAAAEKIEEKLLY 287
D T + P++I AT L N++P GLNV+SMLKH TLVLT +E+KLL+
Sbjct: 220 DLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLW 275
>AB049635-1|BAB40840.1| 311|Homo sapiens mitochondrial ribosomal
protein L4 (L4mt) protein.
Length = 311
Score = 120 bits (288), Expect = 6e-27
Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Frame = -2
Query: 631 SHFFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLELPTDESQYLVDLIENRNWGPSVLII 452
S+++MLP +R GL L+ KLAQDDLHI+ LELPT + QYL +L R WG SVL++
Sbjct: 160 SYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLV 219
Query: 451 DDT-DYAPRNITAATDNLLHVNIMPVYGLNVYSMLKHDTLVLTQAAAEKIEEKLLY 287
D T + P++I AT L N++P GLNV+SMLKH TLVLT +E+KLL+
Sbjct: 220 DLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLW 275
>BC000756-1|AAH00756.1| 263|Homo sapiens mitochondrial ribosomal
protein L4 protein.
Length = 263
Score = 87.4 bits (207), Expect = 4e-17
Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = -2
Query: 631 SHFFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLELPTDESQYLVDLIENRNWGPSVLII 452
S+++MLP +R GL L+ KLAQDDLHI+ LELPT + QYL +L R WG SVL++
Sbjct: 160 SYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLV 219
Query: 451 DDT-DYAPRNITAATDNLLHVNIMPVYG 371
D T + P++I AT L N++P G
Sbjct: 220 DLTHEEMPQSIVEATSRLKTFNLIPAVG 247
>U18671-1|AAA98760.1| 851|Homo sapiens Stat2 protein.
Length = 851
Score = 31.5 bits (68), Expect = 2.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 559 QDDLH-IVKDLELPTDESQYLVDLIENRNWGPSVLIIDDT 443
QD LH + LP D QYL IE++NW + L DD+
Sbjct: 15 QDQLHQLYSHSLLPVDIRQYLAVWIEDQNWQEAALGSDDS 54
>BC051284-1|AAH51284.1| 851|Homo sapiens signal transducer and
activator of transcription 2, 113kDa protein.
Length = 851
Score = 31.5 bits (68), Expect = 2.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 559 QDDLH-IVKDLELPTDESQYLVDLIENRNWGPSVLIIDDT 443
QD LH + LP D QYL IE++NW + L DD+
Sbjct: 15 QDQLHQLYSHSLLPVDIRQYLAVWIEDQNWQEAALGSDDS 54
>BC006092-1|AAH06092.1| 577|Homo sapiens Unknown (protein for
IMAGE:4054862) protein.
Length = 577
Score = 31.5 bits (68), Expect = 2.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 559 QDDLH-IVKDLELPTDESQYLVDLIENRNWGPSVLIIDDT 443
QD LH + LP D QYL IE++NW + L DD+
Sbjct: 15 QDQLHQLYSHSLLPVDIRQYLAVWIEDQNWQEAALGSDDS 54
>AY525126-1|AAS00091.1| 851|Homo sapiens signal transducer and
activator of transcription 2, 113kDa protein.
Length = 851
Score = 31.5 bits (68), Expect = 2.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 559 QDDLH-IVKDLELPTDESQYLVDLIENRNWGPSVLIIDDT 443
QD LH + LP D QYL IE++NW + L DD+
Sbjct: 15 QDQLHQLYSHSLLPVDIRQYLAVWIEDQNWQEAALGSDDS 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,396,455
Number of Sequences: 237096
Number of extensions: 1432104
Number of successful extensions: 6638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6634
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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