Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14g24
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          25   0.81 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.9  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 454 IDDTDYAPRNITAATDNLL 398
           IDD D+AP   T  T N+L
Sbjct: 20  IDDPDFAPSKNTTITHNIL 38


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 625 FFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLE 527
           +F  PF  RLH      +  L + D + V +LE
Sbjct: 100 YFSRPFEKRLHSRLPGRNFNLLRADANSVNELE 132


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -2

Query: 520 TDESQYLVDLIENRNWGPSVLIIDDTDYAPRNITAATDNLLHVNI 386
           T +S  LVD++++ NW     +  +  Y    I   T      N+
Sbjct: 123 TFQSIALVDVVKSANWSYVSTVYSEGSYGEYGIEVFTREATERNV 167


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -2

Query: 520 TDESQYLVDLIENRNWGPSVLIIDDTDYAPRNITAATDNLLHVNI 386
           T +S  LVD++++ NW     +  +  Y    I   T      N+
Sbjct: 213 TFQSIALVDVVKSANWSYVSTVYSEGSYGEYGIEVFTREATERNV 257


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 82  FHHQIQLATFLNTNVKDRAVC 144
           + H I L + LN +   RAVC
Sbjct: 460 YFHSIVLGSLLNPSHMYRAVC 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,593
Number of Sequences: 438
Number of extensions: 2836
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)