Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14g15
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 523 LKEVYLDDNNLSELSPDLMPWSKLDV 446
           + E+YLD+N +++L  +    S  D+
Sbjct: 87  IAEIYLDENEVNKLITECSAISDADI 112


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 381 PCLLTMLTRSQLHSQLLPVIPRTSSLLHGIRSGDNSLKLLSSRYTSFKVHLSFSP 545
           P ++   T+SQLH  L     R+ S          +  LLSS +++    L   P
Sbjct: 660 PAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGP 714


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -1

Query: 212 MDNPCRCNGSCV 177
           +  PCRC+  C+
Sbjct: 475 LPEPCRCHARCI 486


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -2

Query: 286 CPMLDKTFSPRKTFSLSDLRPKHVLWTILAVAMVAAFGMILGLLVNAIKK 137
           C    + F P   F++ D+R    +  I AV    A G +      A KK
Sbjct: 411 CAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKDAAGKVTKAAEKAQKK 460


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -1

Query: 212 MDNPCRCNGSCV 177
           +  PCRC+  C+
Sbjct: 475 LPEPCRCHARCI 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,089
Number of Sequences: 438
Number of extensions: 4037
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)