Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14g01
         (613 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456811-1|CAG33092.1|  360|Homo sapiens RNUT1 protein.                66   9e-11
BC004203-1|AAH04203.1|  360|Homo sapiens snurportin 1 protein.         66   9e-11
AF039029-1|AAC70906.1|  360|Homo sapiens snurportin1 protein.          66   9e-11
X73113-1|CAA51544.1| 1142|Homo sapiens fast MyBP-C protein.            31   3.2  
BC130536-1|AAI30537.1| 1141|Homo sapiens myosin binding protein ...    31   3.2  
BC121061-1|AAI21062.1|  783|Homo sapiens patched domain containi...    30   7.4  
AK054858-1|BAB70816.1|  783|Homo sapiens protein ( Homo sapiens ...    30   7.4  

>CR456811-1|CAG33092.1|  360|Homo sapiens RNUT1 protein.
          Length = 360

 Score = 66.1 bits (154), Expect = 9e-11
 Identities = 36/87 (41%), Positives = 49/87 (56%)
 Frame = -2

Query: 597 LDGLLFYHKKTHYISGQTPLVGWLYPFMVKEVLGYDITVHESYNLERPEDYTNQADYIVR 418
           +DGLLFYHK+THY  G TPLVGWL P+MV +VLG  + V       +P+   +Q   I+ 
Sbjct: 254 VDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLG--VAVPAGPLTTKPDYAGHQLQQIM- 310

Query: 417 FEERKTRTKQSKLDRLRITQMQIGDYE 337
             E K   K+   ++L     + G YE
Sbjct: 311 --EHKKSQKEGMKEKLTHKASENGHYE 335


>BC004203-1|AAH04203.1|  360|Homo sapiens snurportin 1 protein.
          Length = 360

 Score = 66.1 bits (154), Expect = 9e-11
 Identities = 36/87 (41%), Positives = 49/87 (56%)
 Frame = -2

Query: 597 LDGLLFYHKKTHYISGQTPLVGWLYPFMVKEVLGYDITVHESYNLERPEDYTNQADYIVR 418
           +DGLLFYHK+THY  G TPLVGWL P+MV +VLG  + V       +P+   +Q   I+ 
Sbjct: 254 VDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLG--VAVPAGPLTTKPDYAGHQLQQIM- 310

Query: 417 FEERKTRTKQSKLDRLRITQMQIGDYE 337
             E K   K+   ++L     + G YE
Sbjct: 311 --EHKKSQKEGMKEKLTHKASENGHYE 335


>AF039029-1|AAC70906.1|  360|Homo sapiens snurportin1 protein.
          Length = 360

 Score = 66.1 bits (154), Expect = 9e-11
 Identities = 36/87 (41%), Positives = 49/87 (56%)
 Frame = -2

Query: 597 LDGLLFYHKKTHYISGQTPLVGWLYPFMVKEVLGYDITVHESYNLERPEDYTNQADYIVR 418
           +DGLLFYHK+THY  G TPLVGWL P+MV +VLG  + V       +P+   +Q   I+ 
Sbjct: 254 VDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLG--VAVPAGPLTTKPDYAGHQLQQIM- 310

Query: 417 FEERKTRTKQSKLDRLRITQMQIGDYE 337
             E K   K+   ++L     + G YE
Sbjct: 311 --EHKKSQKEGMKEKLTHKASENGHYE 335


>X73113-1|CAA51544.1| 1142|Homo sapiens fast MyBP-C protein.
          Length = 1142

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -2

Query: 516  MVKEVLGYDITVHESYNLERPEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGDYE 337
            MVKEV G +  V   +   + +  +    Y V+  ++KT    +  +R R T   + D  
Sbjct: 941  MVKEVWGTNALVE--WQAPKDDGNSEIMGYFVQKADKKTMEWFNVYERNRHTSCTVSDLI 998

Query: 336  SGETYYSRLYNMDV 295
             G  YY R+Y  ++
Sbjct: 999  VGNEYYFRVYTENI 1012


>BC130536-1|AAI30537.1| 1141|Homo sapiens myosin binding protein C,
            fast type protein.
          Length = 1141

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -2

Query: 516  MVKEVLGYDITVHESYNLERPEDYTNQADYIVRFEERKTRTKQSKLDRLRITQMQIGDYE 337
            MVKEV G +  V   +   + +  +    Y V+  ++KT    +  +R R T   + D  
Sbjct: 940  MVKEVWGTNALVE--WQAPKDDGNSEIMGYFVQKADKKTMEWFNVYERNRHTSCTVSDLI 997

Query: 336  SGETYYSRLYNMDV 295
             G  YY R+Y  ++
Sbjct: 998  VGNEYYFRVYTENI 1011


>BC121061-1|AAI21062.1|  783|Homo sapiens patched domain containing
           1 protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 136 KYFISYHPFF*-YDYPNLEEWNTSISNLVVWY 228
           KYF +Y P    Y Y ++E WNTS+   V+ Y
Sbjct: 442 KYFSNYSPVIGFYIYESIEYWNTSVQEDVLEY 473


>AK054858-1|BAB70816.1|  783|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30296 fis, clone BRACE2003110, weakly similar to
           PATCHED PROTEIN HOMOLOG 1. ).
          Length = 783

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 136 KYFISYHPFF*-YDYPNLEEWNTSISNLVVWY 228
           KYF +Y P    Y Y ++E WNTS+   V+ Y
Sbjct: 442 KYFSNYSPVIGFYIYESIEYWNTSVQEDVLEY 473


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,027,159
Number of Sequences: 237096
Number of extensions: 1792907
Number of successful extensions: 3711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3711
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)