Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f24
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    31   0.17 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.1  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.8  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    27   3.7  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   3.7  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   4.9  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    26   4.9  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   6.5  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   8.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   8.6  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   8.6  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 476 LQSEVVVSGNELDEVSGHDESKVKGEVLSNNVLSVADPELVAVLHGVPSLVNDQVVDYIL 655
           L  ++V+ G++  +V  HD      E LS    S   P+L    HGV + VN  V DYI 
Sbjct: 176 LDKQIVLLGDDTWDVLFHD---YLNETLSQPAFSFNVPDL----HGVDNKVNQYVFDYIK 228

Query: 656 D 658
           D
Sbjct: 229 D 229


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 455  GIGCGTELQSEVVVSGNELDEVSGHDESKVKGEVLSNNVLSVADPELVAVLHGVPSLVN 631
            G  CG   +   VV    LD V G DE+   G+ LS +     DP  + ++H + S +N
Sbjct: 1113 GHSCGVIKEYSTVVVMGSLDGVEGSDETVSGGQRLSLDRPPTNDPASL-MIHQLISCMN 1170


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 578 VADPELVAVLHGVPSLVNDQVVDYILDDG 664
           V D   V + H +PS+V D   DYI  +G
Sbjct: 239 VYDSPWVDLTHSLPSVVADDAADYIPSEG 267


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 467 GTELQSEVVVSGNELDEVSGHDESKVKGEVLSNNVLSVADPELVAVLHGVPSLVNDQV 640
           G E++S +    N+++E     + ++  EVLS N  +    E   V + +PS+   Q+
Sbjct: 477 GVEIKSNLEAKSNDVEEYDAFYKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQI 534


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -1

Query: 664 SIIQNVVDDLIIDKRRNTMEYCYKLWVGNGQHIVRKYF 551
           +II   V + I+D+  +  ++C ++W G     +R ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 400 SWKFITLWENNRVYFKVHNTKYNQYL-KMSSKTDCNNRDRLVYGGNTAD 257
           +WK I+L E  R+++        QYL K SS  D  NRD  V+    +D
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKD--NRDLKVFADYGSD 584


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 465 QPIPRTKDLHSAMVQTSRLNSSVGSSLPCGRTTE 364
           Q   + KD+ SA  +   +NSS  SS  C   T+
Sbjct: 108 QQTEKEKDVDSASAENESINSSSSSSKECSTQTQ 141


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 527 HDESKVKGEVLSNNVLSVADPELVAVLHGVPSL 625
           HD S+   + + N++LSV DP +    H VPS+
Sbjct: 516 HDLSRGNRDKIRNSILSVYDPNVSQ--HRVPSI 546


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 298 NNRDRLVYG--GNTADSTSEQWFLQPAKYENDVLFFIYNREHNDALELGAIVNA 143
           NN  +L++    ++  ST + ++  P +    + F I+NREH D +   A + A
Sbjct: 680 NNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHFDFIVAAASLYA 733


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 144 AFTIAPSSKASLCSRL*MKNRTSFSYFAGWRNHCSLVLS 260
           + T + S+  S  S L  K  T FSY AG  + CS+ +S
Sbjct: 117 SLTRSASATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVS 155


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 392 LPTDEFSLLVCTIAECKSFVRGIGCGTELQS-EVVVS-GNELDEVSGHDESKVKGEVLSN 565
           LP DEF LL   IAE   F +         + E++V  GN +      + S + GE  + 
Sbjct: 724 LPNDEFHLLPSAIAEVVLFSKHHDDDLRAMAFELLVEVGNRMKNGGKINMSLIDGEEPNK 783

Query: 566 NVLSVADPELVAVLHGVPSLVNDQV 640
            V+     E ++++    +L+ND +
Sbjct: 784 TVVEANINEYISMISA--NLMNDSL 806


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,734
Number of Sequences: 5004
Number of extensions: 52319
Number of successful extensions: 205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)