Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f24
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    32   0.55 
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    30   2.2  
09_01_0142 - 2103224-2103864,2104264-2104399                           28   9.0  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   9.0  

>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 428 IAECKS--FVRGIGCGTELQSEVVVSGNELDEVSGHDESKVKGEVLSNNVLSVADPE 592
           + ECK      GIGCG +   +V+  G ++DE  G  + K   E  + N ++   PE
Sbjct: 620 VTECKGDDTNEGIGCGGKGADDVIGKGKQVDEGIGFGDKKKHEEKQAPNAVAQNVPE 676


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 298 NNRDRLVYGGNTADSTSEQWFLQPAKYENDVLFFIYNRE 182
           +N  R  +G +T+   SE   LQP K EN +LF +  R+
Sbjct: 746 SNVPRSPFGCSTSIMVSEGDLLQPEKIENGILFNVVKRD 784


>09_01_0142 - 2103224-2103864,2104264-2104399
          Length = 258

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 584 RQRTAHC*KVLPL*L*THHGRK--LRQAHFQKLQPRSEARFHNQSLERKTCIRRWCR 420
           RQ T H  K  P+    +HGR    R  H   L P S A+ HNQ    +    + CR
Sbjct: 36  RQLTRHLIKYAPVQ--ANHGRSNIARDVHKSLLVPVSAAKVHNQKPAPRDQASQLCR 90


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 241 WFLQPAKYENDVLFFIYNREHNDALELG 158
           W      Y  DVL F YN+E++D   +G
Sbjct: 59  WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,398,645
Number of Sequences: 37544
Number of extensions: 353321
Number of successful extensions: 1187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)