Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f24
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    24   7.6  
Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z81517-5|CAB04212.1|  685|Caenorhabditis elegans Hypothetical
           protein F28B1.5 protein.
          Length = 685

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 386 NELPTDEFSLLVCTIAECKSFVRGIGCGTELQSEVVVSGNELDEVSGHDESKVKGEVLSN 565
           + +  D+F L++    E   F+R    GT+  S   +S     EV+GH + + +G  L+ 
Sbjct: 136 SSIEIDDFYLMLFHDKELPIFMRRFYAGTDKASPATLSDLGCREVNGHIQWEYRGSKLTE 195

Query: 566 NVLSVA 583
           N L +A
Sbjct: 196 NELFIA 201


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +2

Query: 557 LSNNVLSVADPELVAVLHGVPSLVNDQVVDYILDDGTP 670
           L +++L+V D  L  +LHG  +  N ++V++++  G P
Sbjct: 509 LPHHILTVQDLNLNTLLHGAINSENFELVEFLIHMGAP 546


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 24.2 bits (50), Expect(2) = 7.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 565 QCAVRCRPRACSSTPWCSVSCQ*SGRRLH 651
           QC        C +T +CSV CQ    ++H
Sbjct: 127 QCNSEAIYHCCWNTAYCSVECQQGHWQIH 155



 Score = 22.2 bits (45), Expect(2) = 7.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 424 HHRRMQVFRSRDWLWNRASE 483
           H R + V + + W W   SE
Sbjct: 112 HQRELAVAKKKQWCWQCNSE 131


>Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical
           protein C25F9.5 protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 467 HNQSLERKTCIRRWCRQAD*TRQLEVHYLVGEQQSV 360
           H Q L + + + RWC   + T +   H+L G    +
Sbjct: 357 HYQKLLQLSVMHRWCLTEENTHRFSAHFLKGNNDKI 392


>AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical
           protein Y111B2A.21 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 559 KYFPFNFRLIMAGNFVKLISRNYNLALKLGSTTNPSNERLAFGDGADKQTELVSWKFITL 380
           +Y P  FR  +    V    R+   A K+ S  +PS    AFG G + Q  L  W  +T+
Sbjct: 119 QYLPMPFRTSIPMKLVIFAVRSEESAEKIRSLIDPSMWIAAFGGGTETQKFL--WSELTV 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,855
Number of Sequences: 27780
Number of extensions: 301927
Number of successful extensions: 1043
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)