Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f23
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...   146   2e-36
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    31   0.13 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    28   1.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   3.6  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.6  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    26   6.3  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score =  146 bits (355), Expect = 2e-36
 Identities = 71/144 (49%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
 Frame = -3

Query: 727  VCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSEPIA-PSTNTYNENKWTLWDRFEVKGE 551
            VCLEL KL  G  K+E +KNGF NLA+  F FS+PIA P      +    +WDR+ +  +
Sbjct: 866  VCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLP-D 924

Query: 550  ITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEP 371
             TLQ+ +D+F+ E  LE+TMLS GV +LY+ F P  K  ERL L +SE+V +++KKKLEP
Sbjct: 925  CTLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEP 984

Query: 370  HVNALVFELCCNDDDGNDVEVPYV 299
                LV E+CC+D +G DVEVP++
Sbjct: 985  FRKHLVLEICCDDANGEDVEVPFI 1008


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 291 VYFTYGTSTSFPSSSLQHNSKTNAFTCGSNFFLDTFVTTSDIGRFNRSSRLALGMKN 461
           +YFT GT+  FP   L+HN  +  F C S   L   +T  D+  F   S  +  +KN
Sbjct: 23  LYFTIGTN--FPHDELRHNLLSTLF-CSSMLHLSKGLTVKDVRIFFHDSIGSTLLKN 76


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 538 QFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLER 428
           +FL   K   KLE    S+ V ML +  + KAKRLE+
Sbjct: 231 EFLRLSKRMKKLEELWTSENVSMLDALLLNKAKRLEQ 267


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 147 LQSKFQIITHSRFVSFVCSLSNDDVLHFYY-YFTS*KSFL-PNSIFY 13
           L S+F+    S F  F    S+DD  HFY   +T   + L PNS+ Y
Sbjct: 475 LWSRFRFPKDSEFPEFFKCSSDDDNTHFYVNLYTGETTMLFPNSMPY 521


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 390 DTFVTTSDIGRFNRSSRLALGMKNE*SMH 476
           +TFVTT DI + +R+S L+L   +   +H
Sbjct: 437 ETFVTTDDITQLSRTSTLSLSTASPRLVH 465


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 542 TAIFRSLQKRTQVGDHHVVSRCVHALFVLHAQSQ 441
           TAI R +    +V D +  S CV  L +LHA+S+
Sbjct: 47  TAI-REISLLKEVNDENNRSNCVRLLDILHAESK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,351
Number of Sequences: 5004
Number of extensions: 59630
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)