Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f23
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 120 2e-27
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 118 4e-27
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 111 7e-25
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 109 2e-24
01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605 30 2.2
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 28 6.6
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 28 8.7
>12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 120 bits (288), Expect = 2e-27
Identities = 58/143 (40%), Positives = 88/143 (61%)
Frame = -3
Query: 727 VCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEI 548
VCLELYK+ G +K+E ++N F NLA+P F +EP+ P T + + WT+WDR+ + G I
Sbjct: 910 VCLELYKVLGGGHKVEDYRNTFANLAIPLFSMAEPVPPKTIKHQDMAWTVWDRWTITGNI 969
Query: 547 TLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPH 368
TL++ LD K E L +S G +LY+ P+ K ERL+ + +V +V+K ++ P+
Sbjct: 970 TLRELLDWLK-EKGLNAYSISCGTSLLYNSMFPRHK--ERLDKKVVDVAREVAKVEVPPY 1026
Query: 367 VNALVFELCCNDDDGNDVEVPYV 299
L + C DDD NDV++P V
Sbjct: 1027 RRHLDVVVACEDDDDNDVDIPLV 1049
>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 118 bits (285), Expect = 4e-27
Identities = 57/141 (40%), Positives = 87/141 (61%)
Frame = -3
Query: 727 VCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEI 548
VCLELYK+ G +K+E ++N F NLA+P F +EP+ P T + + WT+WDR+ + G I
Sbjct: 1034 VCLELYKVLGGGHKVEDYRNTFANLAIPLFSMAEPVPPKTIKHQDMAWTVWDRWTITGNI 1093
Query: 547 TLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPH 368
TL++ LD K E L +S G +LY+ P+ K ERL+ + +V +V+K ++ P+
Sbjct: 1094 TLRELLDWLK-EKGLNAYSISCGTSLLYNSMFPRHK--ERLDKKVVDVAREVAKVEVPPY 1150
Query: 367 VNALVFELCCNDDDGNDVEVP 305
L + C DDD NDV++P
Sbjct: 1151 RRHLDVVVACEDDDDNDVDIP 1171
>07_03_1774 + 29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 111 bits (266), Expect = 7e-25
Identities = 53/143 (37%), Positives = 83/143 (58%)
Frame = -3
Query: 727 VCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEI 548
VCLELYK+ G + +E ++N F NLALP F +EP+ P + + WT+WDR+ +KG +
Sbjct: 941 VCLELYKVIAGEHPIEDYRNTFANLALPLFSMAEPVPPKVMKHQDMSWTVWDRWSIKGNL 1000
Query: 547 TLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPH 368
T+ + L F ++ L +S G +LY+ A+ ERLN + +V +V+K + +
Sbjct: 1001 TVAELLQWF-SDKGLTAYSISCGTSLLYNNMF--ARHKERLNKKVVDVAREVAKVDVPEY 1057
Query: 367 VNALVFELCCNDDDGNDVEVPYV 299
L C DDDGND+++P V
Sbjct: 1058 RKHLDLVAACEDDDGNDIDIPLV 1080
>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 109 bits (263), Expect = 2e-24
Identities = 50/143 (34%), Positives = 86/143 (60%)
Frame = -3
Query: 727 VCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEI 548
VCLELYK+ G + +E ++N F NLA+P F +EP+ P + + +WT+WDR+ ++G I
Sbjct: 1035 VCLELYKVLAGGHPVEDYRNSFANLAIPMFSMAEPLPPKVIKHQDMRWTIWDRWSIEGNI 1094
Query: 547 TLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPH 368
T+ + L + ++ L +S G +LY+ P+ K +R+N + +V +V+K + +
Sbjct: 1095 TVAELL-KWLSDKGLSAYSVSCGTSLLYNTMFPRHK--DRVNKKLVDVAKEVAKVDVPAY 1151
Query: 367 VNALVFELCCNDDDGNDVEVPYV 299
L + C DDDGNDV++P +
Sbjct: 1152 RRHLDVVVACEDDDGNDVDIPLI 1174
>01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605
Length = 821
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 693 SISWKCSRTASSTLPCPSSVSLNRLRRRPTPTMRISGHYGTDLKLK 556
+I+W + LP PSS++ LRR PT ++ H T + LK
Sbjct: 389 TITWIGEASTEPYLPLPSSLTKLDLRRAPTASLLNIIHPSTSVSLK 434
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -1
Query: 726 SASNFTNWPKASISWKCSRTASSTLP 649
S+ +F++W +S SW+ S ++SS+ P
Sbjct: 130 SSDSFSSWSSSSDSWRSSSSSSSSPP 155
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -1
Query: 549 LHYSNF*ITSKTNTSWRSPCCLKVCACFIRSSCPKPSGW 433
+ Y + +K N W P C +C C S C GW
Sbjct: 252 MRYGENVLEAKKNPDWICPVCRGICNC---SICRTKKGW 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,620
Number of Sequences: 37544
Number of extensions: 366876
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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