Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f23
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...   148   4e-36
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...   148   4e-36
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81036-3|CAB02741.1|  357|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U97196-7|AAB52462.1|  141|Caenorhabditis elegans Hypothetical pr...    28   7.9  
L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
            protein C47E12.5b protein.
          Length = 1028

 Score =  148 bits (359), Expect = 4e-36
 Identities = 72/151 (47%), Positives = 103/151 (68%), Gaps = 5/151 (3%)
 Frame = -3

Query: 727  VCLELYKL--AQGFNK--LEVFKNGFVNLALPFFGFSEPIAPSTNTYNENKWTLWDRFEV 560
            VC+ELYK+  A G  K  +E FKN F+NL++PFF  +EPI     TY + ++TLWDR +V
Sbjct: 877  VCIELYKVVDANGIPKTPMERFKNTFLNLSMPFFSSAEPIGAPKKTYMDREFTLWDRIDV 936

Query: 559  KGEITLQQFLDHFKNEHK-LEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKK 383
            +G +TLQ+F+D+ +N+    E++MLS G C+L+SFFM   K+ ERL   +  V  ++ KK
Sbjct: 937  QGPLTLQEFIDNVQNQTGGCEVSMLSAGACLLFSFFMNAGKKQERLKTEVKAVYEELLKK 996

Query: 382  KLEPHVNALVFELCCNDDDGNDVEVPYVKYT 290
             L P V+ALV E   +D DG DVEVPY++Y+
Sbjct: 997  SLHPSVHALVLEPMMSDPDGEDVEVPYIRYS 1027


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
            protein C47E12.5a protein.
          Length = 1113

 Score =  148 bits (359), Expect = 4e-36
 Identities = 72/151 (47%), Positives = 103/151 (68%), Gaps = 5/151 (3%)
 Frame = -3

Query: 727  VCLELYKL--AQGFNK--LEVFKNGFVNLALPFFGFSEPIAPSTNTYNENKWTLWDRFEV 560
            VC+ELYK+  A G  K  +E FKN F+NL++PFF  +EPI     TY + ++TLWDR +V
Sbjct: 962  VCIELYKVVDANGIPKTPMERFKNTFLNLSMPFFSSAEPIGAPKKTYMDREFTLWDRIDV 1021

Query: 559  KGEITLQQFLDHFKNEHK-LEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKK 383
            +G +TLQ+F+D+ +N+    E++MLS G C+L+SFFM   K+ ERL   +  V  ++ KK
Sbjct: 1022 QGPLTLQEFIDNVQNQTGGCEVSMLSAGACLLFSFFMNAGKKQERLKTEVKAVYEELLKK 1081

Query: 382  KLEPHVNALVFELCCNDDDGNDVEVPYVKYT 290
             L P V+ALV E   +D DG DVEVPY++Y+
Sbjct: 1082 SLHPSVHALVLEPMMSDPDGEDVEVPYIRYS 1112


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 702 PKASISWKCSRTASSTLPCPSSVSLNRLRRRPTPTMRISGHYGTDLKLKER 550
           P   +S   S  +S++ P PSS+S   +    TP  RI G      K KE+
Sbjct: 521 PSGGMSPISSSVSSASAPSPSSLSAGSVSPDSTPKKRIVGSNANFEKAKEK 571


>Z81036-3|CAB02741.1|  357|Caenorhabditis elegans Hypothetical
           protein C16C2.4 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 418 PMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEV 308
           P S    K  KK+ EP V   V E  C D+D  + E+
Sbjct: 261 PQSSSEIKEEKKENEPEVKETVSEESCEDEDEEEEEL 297


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 673 KNGFVNLALPFFGFSEPIAPSTN 605
           KNG + +   FFGFSE I+P  N
Sbjct: 90  KNGVLKVRFFFFGFSEFISPEPN 112


>U97196-7|AAB52462.1|  141|Caenorhabditis elegans Hypothetical
           protein B0207.8 protein.
          Length = 141

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 676 FKNGFVNLALPFFGFSEPIAPSTNTYNENKWTLWDR 569
           FKNGF    + F  F      +    +ENKW L  R
Sbjct: 99  FKNGFCENTMKFVNFQNINRSTNEILDENKWHLMYR 134


>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 294 YFTYGTSTSFPSSSLQHNSKTNAFTCGSNFFLDTFVTTSDIGRFNRSS 437
           YF  G STS  +   +HN+++   T GSN   +  ++ S+I R  + S
Sbjct: 73  YFP-GISTSLINVQREHNNRSKYDTWGSNSCSEPRISISNIERLEKPS 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,471
Number of Sequences: 27780
Number of extensions: 333748
Number of successful extensions: 924
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)