Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f21
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    41   2e-04
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    29   0.63 
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    29   0.83 
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    29   0.83 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   1.9  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   2.5  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   5.9  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   7.8  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   7.8  

>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
 Frame = -2

Query: 578 KQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXX 399
           + E  +PE ++ W+E+Q                  ++ A+K ++D+Y++  ++  K    
Sbjct: 100 EDESGDPEPVRKWKEDQMKRIQERDESSKKLRESNIEKARKAIDDFYENFNDKRDKVIAK 159

Query: 398 XXXXXXXXXRGSESSVEEGNEWARVSELCDFGPR---RGRDVARLRSIVLQLKQAGSRP 231
                      +ES       W R+ +L D   +    GR   R R +++ L +  + P
Sbjct: 160 SRKEQEKLLEENESKSTGTTSWERILKLIDLSDKPEAHGRSTERFRELLISLAKDSNAP 218


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 359 FQILELVLALHSCWQL*FWKSVLHVICTS 445
           F +L L  A H C  + FWK++   +CT+
Sbjct: 411 FLVLHLTQAFHVCPSVTFWKTLFMSLCTA 439


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 570 FLFEYCC-WSGSQWSIIQQTVSIK 638
           FLF YCC W    W I+ +T  I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 570 FLFEYCC-WSGSQWSIIQQTVSIK 638
           FLF YCC W    W I+ +T  I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 238 LAQTTHHVLLKWLEIFITVCIISYYIISPLSKITLIIFINIRQANINNVQAKHNSG 71
           L   +H VL+  L   I+ C I+  +IS        +   IRQ + +   ++HN G
Sbjct: 211 LHSKSHGVLMAALAFAISACKINPSLISRFESQADDLIYRIRQLSTSTYSSEHNIG 266


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 205 WL-EIFITVCIISYYIISPLSKITLIIFI 122
           WL  IF T+   +YY++S  +KIT+ IF+
Sbjct: 408 WLFSIFCTIA--AYYLVSSSTKITVFIFL 434


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 326 PGPIHFLPPHYFQILEL 376
           P P+ FL PHYF ++++
Sbjct: 94  PKPLKFLRPHYFTLVKI 110


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 455 LSWLSEAFLASFVLPQHLSLLIFSF 529
           +SW++ A L     PQ  +LL+F F
Sbjct: 705 MSWIAGALLMHLPAPQAFALLVFLF 729


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 549 QNMARRTKEKIRRERC*GRTKEARNASDSQERTGGL 442
           + + +R  E+IRRE+   R  EA+  ++  +  GGL
Sbjct: 606 EEINKRNAERIRREKEAIRINEAKKLAEELKAKGGL 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,751
Number of Sequences: 5004
Number of extensions: 56474
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)