Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f21
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 33 0.28
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225... 30 1.5
11_01_0484 - 3720376-3720671,3721209-3721767,3722209-3722640,372... 29 3.5
12_02_0635 - 21430245-21431156 28 6.0
10_06_0036 - 9914606-9915561,9916287-9916368 28 6.0
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 28 6.0
01_06_0268 - 28026512-28026682,28026782-28026919,28027151-280273... 28 6.0
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 28 8.0
07_01_0866 - 7195305-7195756,7197171-7197447 28 8.0
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Frame = -3
Query: 451 WRTGTNHMKNRFPKLKLPTGMQSE-HKLEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHA 275
W G N + K K TG+ + + + +V+W+ PG L+F L + WH
Sbjct: 579 WAYGMNIFDLKEWKKKDITGIYHKWQSMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHV 638
Query: 274 YG---QLCFSSSKLDLAQTTHH--VLLKWLEIFIT 185
G S++D A H+ + WLE+ +T
Sbjct: 639 LGLGYNPSIDRSEIDNAAVVHYNGNMKPWLELAMT 673
>06_03_1369 +
29620958-29621030,29622421-29622452,29622538-29622598,
29622695-29622711,29622916-29623250,29623329-29623686,
29623784-29624371,29624664-29624939
Length = 579
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = -3
Query: 451 WRTGTNHMKNRFPKLKLPTGMQSE-HKLEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHA 275
W G N K K TG+ + + + +++W+ PG L+F L + WH
Sbjct: 461 WAYGMNMFDLEEWKKKDITGIYHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHV 520
Query: 274 YG---QLCFSSSKLDLAQTTHH--VLLKWLEI 194
G S++D A H+ + WLEI
Sbjct: 521 LGLGYNPSIERSEIDNAAVIHYNGNMKPWLEI 552
>11_01_0484 -
3720376-3720671,3721209-3721767,3722209-3722640,
3723126-3723485
Length = 548
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -2
Query: 275 LRSIVLQLKQAGSRPNYPSRATKVA*NLHHSLYNILLYYQSAFEDHINYFYKYKTGQY 102
LR + LK G ++ K+ LH Y++ Y+ F H+N Y+YKT +Y
Sbjct: 281 LRCALQMLKPDGEGKDF---IEKIGQRLHALTYHMRNYFWLDFP-HLNNIYRYKTEEY 334
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 303 TPSRK--GCGTLTVNCASAQASWISPKLPITC 214
TP R GC LT+ C+ S+ SP P++C
Sbjct: 272 TPPRPYVGCPRLTIPCSCENQSFKSPAKPLSC 303
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -2
Query: 359 SSVEEGNEWARVSELCDFGPRRGRDVARLRSIVLQLKQAGSRPNYPSRATKVA*NLHHSL 180
SSV W R L + +A + + + GSR RA++ A NLHH+L
Sbjct: 68 SSVLGAESWLRAHVLAHYPSNHVTAIA----VAVACARGGSRHGQDLRASRAAKNLHHAL 123
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 271 RKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARS 387
R RAT+ P+ S++ +AHSF S P A AR+
Sbjct: 3 RPRATTAAASRPRRASTKPKAHSFLSPVAPPPPSARARA 41
>01_06_0268 -
28026512-28026682,28026782-28026919,28027151-28027366,
28027488-28027564,28027845-28028448
Length = 401
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 287 PFLDGVQSHKAQKPGPIHFLPPHYFQILELVLALHSCWQL*F----WKSVLHVICTSPPV 454
P L + + ++ GP+H LPP + LAL + W L + W +V+ V+C +
Sbjct: 100 PALPSSAAGRRRREGPLHALPPRP-PLAAGALAL-AAWALSYLVLAWHTVVDVVCFTLTA 157
Query: 455 LSWLSEA 475
S + +A
Sbjct: 158 ASLMGDA 164
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 416 KSVLHVICTSPPVLSW 463
K+VLH+ C PP +SW
Sbjct: 10 KAVLHMDCEKPPAISW 25
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +1
Query: 217 RDG*FGRDPACLS*STIDRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARSAFL 396
R+G DP LS T D + + RR P RA S + + P C +SA
Sbjct: 6 REGKRSPDPPLLSPPTADPRERETKRRRDPGVGGGSARAASTAWNRCMRRPCRCPQSATA 65
Query: 397 LAALV 411
L L+
Sbjct: 66 LLHLL 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,323
Number of Sequences: 37544
Number of extensions: 353597
Number of successful extensions: 1062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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