Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f21
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M20472-1|AAA59505.1| 218|Homo sapiens CLTA protein. 77 6e-14
BT007170-1|AAP35834.1| 218|Homo sapiens clathrin, light polypep... 77 6e-14
BC019287-1|AAH19287.1| 218|Homo sapiens clathrin, light chain (... 77 6e-14
BC009201-1|AAH09201.1| 218|Homo sapiens clathrin, light chain (... 77 6e-14
AL158830-5|CAD13387.1| 218|Homo sapiens clathrin, light chain (... 77 6e-14
M20470-1|AAA59506.1| 211|Homo sapiens CLTB protein. 72 2e-12
CR536577-1|CAG38814.1| 211|Homo sapiens CLTB protein. 72 2e-12
BT007028-1|AAP35675.1| 211|Homo sapiens clathrin, light polypep... 72 2e-12
BC006457-1|AAH06457.1| 211|Homo sapiens clathrin, light chain (... 72 2e-12
BC006332-1|AAH06332.1| 211|Homo sapiens clathrin, light chain (... 72 2e-12
DQ270158-1|ABB76683.1| 236|Homo sapiens brain-specific clathrin... 64 6e-10
M20469-1|AAA51818.1| 229|Homo sapiens CLTB protein. 60 5e-09
M20471-1|AAA51817.1| 248|Homo sapiens CLTA protein. 46 1e-04
AL158830-6|CAD13388.1| 248|Homo sapiens clathrin, light chain (... 46 1e-04
>M20472-1|AAA59505.1| 218|Homo sapiens CLTA protein.
Length = 218
Score = 77.0 bits (181), Expect = 6e-14
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = -2
Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXX 390
+ EPE I+ WREEQ E + A KELE+WY +EQ+ KTK
Sbjct: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRA 163
Query: 389 XXXXXXRGSESSVEEGNEWARVSELCDFGP---RRGRDVARLRSIVLQLKQA 243
+ S G EW RV+ LCDF P ++ +DV+R+RS+++ LKQA
Sbjct: 164 AEEAFVNDIDES-SPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA 214
>BT007170-1|AAP35834.1| 218|Homo sapiens clathrin, light
polypeptide (Lca) protein.
Length = 218
Score = 77.0 bits (181), Expect = 6e-14
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = -2
Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXX 390
+ EPE I+ WREEQ E + A KELE+WY +EQ+ KTK
Sbjct: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRA 163
Query: 389 XXXXXXRGSESSVEEGNEWARVSELCDFGP---RRGRDVARLRSIVLQLKQA 243
+ S G EW RV+ LCDF P ++ +DV+R+RS+++ LKQA
Sbjct: 164 AEEAFVNDIDES-SPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA 214
>BC019287-1|AAH19287.1| 218|Homo sapiens clathrin, light chain
(Lca) protein.
Length = 218
Score = 77.0 bits (181), Expect = 6e-14
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = -2
Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXX 390
+ EPE I+ WREEQ E + A KELE+WY +EQ+ KTK
Sbjct: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRA 163
Query: 389 XXXXXXRGSESSVEEGNEWARVSELCDFGP---RRGRDVARLRSIVLQLKQA 243
+ S G EW RV+ LCDF P ++ +DV+R+RS+++ LKQA
Sbjct: 164 AEEAFVNDIDES-SPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA 214
>BC009201-1|AAH09201.1| 218|Homo sapiens clathrin, light chain
(Lca) protein.
Length = 218
Score = 77.0 bits (181), Expect = 6e-14
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = -2
Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXX 390
+ EPE I+ WREEQ E + A KELE+WY +EQ+ KTK
Sbjct: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRA 163
Query: 389 XXXXXXRGSESSVEEGNEWARVSELCDFGP---RRGRDVARLRSIVLQLKQA 243
+ S G EW RV+ LCDF P ++ +DV+R+RS+++ LKQA
Sbjct: 164 AEEAFVNDIDES-SPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA 214
>AL158830-5|CAD13387.1| 218|Homo sapiens clathrin, light chain
(Lca) protein.
Length = 218
Score = 77.0 bits (181), Expect = 6e-14
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Frame = -2
Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXX 390
+ EPE I+ WREEQ E + A KELE+WY +EQ+ KTK
Sbjct: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRA 163
Query: 389 XXXXXXRGSESSVEEGNEWARVSELCDFGP---RRGRDVARLRSIVLQLKQA 243
+ S G EW RV+ LCDF P ++ +DV+R+RS+++ LKQA
Sbjct: 164 AEEAFVNDIDES-SPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA 214
>M20470-1|AAA59506.1| 211|Homo sapiens CLTB protein.
Length = 211
Score = 72.1 bits (169), Expect = 2e-12
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = -2
Query: 566 EEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXXX 387
+EPE I+ WREEQ E + AKK+LE+W + EQ+ K K
Sbjct: 98 QEPESIRKWREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRAS 157
Query: 386 XXXXXRGSESSVEEGNEWARVSELCDFGPRRG---RDVARLRSIVLQLKQ 246
+ S+ G EW +V++LCDF P+ +DV+RLRS+++ LKQ
Sbjct: 158 EEAFVKESKEETP-GTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQ 206
>CR536577-1|CAG38814.1| 211|Homo sapiens CLTB protein.
Length = 211
Score = 72.1 bits (169), Expect = 2e-12
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = -2
Query: 566 EEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXXX 387
+EPE I+ WREEQ E + AKK+LE+W + EQ+ K K
Sbjct: 98 QEPESIRKWREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRAS 157
Query: 386 XXXXXRGSESSVEEGNEWARVSELCDFGPRRG---RDVARLRSIVLQLKQ 246
+ S+ G EW +V++LCDF P+ +DV+RLRS+++ LKQ
Sbjct: 158 EEAFVKESKEETP-GTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQ 206
>BT007028-1|AAP35675.1| 211|Homo sapiens clathrin, light
polypeptide (Lcb) protein.
Length = 211
Score = 72.1 bits (169), Expect = 2e-12
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = -2
Query: 566 EEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXXX 387
+EPE I+ WREEQ E + AKK+LE+W + EQ+ K K
Sbjct: 98 QEPESIRKWREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRAS 157
Query: 386 XXXXXRGSESSVEEGNEWARVSELCDFGPRRG---RDVARLRSIVLQLKQ 246
+ S+ G EW +V++LCDF P+ +DV+RLRS+++ LKQ
Sbjct: 158 EEAFVKESKEETP-GTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQ 206
>BC006457-1|AAH06457.1| 211|Homo sapiens clathrin, light chain
(Lcb) protein.
Length = 211
Score = 72.1 bits (169), Expect = 2e-12
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = -2
Query: 566 EEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXXX 387
+EPE I+ WREEQ E + AKK+LE+W + EQ+ K K
Sbjct: 98 QEPESIRKWREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRAS 157
Query: 386 XXXXXRGSESSVEEGNEWARVSELCDFGPRRG---RDVARLRSIVLQLKQ 246
+ S+ G EW +V++LCDF P+ +DV+RLRS+++ LKQ
Sbjct: 158 EEAFVKESKEETP-GTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQ 206
>BC006332-1|AAH06332.1| 211|Homo sapiens clathrin, light chain
(Lcb) protein.
Length = 211
Score = 72.1 bits (169), Expect = 2e-12
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Frame = -2
Query: 566 EEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXXX 387
+EPE I+ WREEQ E + AKK+LE+W + EQ+ K K
Sbjct: 98 QEPESIRKWREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRAS 157
Query: 386 XXXXXRGSESSVEEGNEWARVSELCDFGPRRG---RDVARLRSIVLQLKQ 246
+ S+ G EW +V++LCDF P+ +DV+RLRS+++ LKQ
Sbjct: 158 EEAFVKESKEETP-GTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQ 206
>DQ270158-1|ABB76683.1| 236|Homo sapiens brain-specific clathrin
light polypeptide protein.
Length = 236
Score = 63.7 bits (148), Expect = 6e-10
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Frame = -2
Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXX 390
+ EPE I+ WREEQ E + A KELE+WY +EQ+ KTK
Sbjct: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRV 163
Query: 389 XXXXXXRGSESSV-----------------EEGNEWARVSELCDFGP---RRGRDVARLR 270
+ + V +G EW RV+ LCDF P ++ +DV+R+R
Sbjct: 164 ADEAFYKQPFADVIGYVAAEEAFVNDIDESSQGTEWERVARLCDFNPKSSKQAKDVSRMR 223
Query: 269 SIVLQLKQA 243
S+++ LKQA
Sbjct: 224 SVLISLKQA 232
>M20469-1|AAA51818.1| 229|Homo sapiens CLTB protein.
Length = 229
Score = 60.5 bits (140), Expect = 5e-09
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 20/127 (15%)
Frame = -2
Query: 566 EEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXXX 387
+EPE I+ WREEQ E + AKK+LE+W + EQ+ K K
Sbjct: 98 QEPESIRKWREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 157
Query: 386 XXXXXR-----------GSESSVEE------GNEWARVSELCDFGPRRGR---DVARLRS 267
+ E+ V+E G EW +V++LCDF P+ + DV+RLRS
Sbjct: 158 DKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRS 217
Query: 266 IVLQLKQ 246
+++ LKQ
Sbjct: 218 VLMSLKQ 224
>M20471-1|AAA51817.1| 248|Homo sapiens CLTA protein.
Length = 248
Score = 46.0 bits (104), Expect = 1e-04
Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Frame = -2
Query: 344 GNEWARVSELCDFGP---RRGRDVARLRSIVLQLKQA 243
G EW RV+ LCDF P ++ +DV+R+RS+++ LKQA
Sbjct: 208 GTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA 244
Score = 43.6 bits (98), Expect = 7e-04
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = -2
Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTK 405
+ EPE I+ WREEQ E + A KELE+WY +EQ+ KTK
Sbjct: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
>AL158830-6|CAD13388.1| 248|Homo sapiens clathrin, light chain
(Lca) protein.
Length = 248
Score = 46.0 bits (104), Expect = 1e-04
Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 3/37 (8%)
Frame = -2
Query: 344 GNEWARVSELCDFGP---RRGRDVARLRSIVLQLKQA 243
G EW RV+ LCDF P ++ +DV+R+RS+++ LKQA
Sbjct: 208 GTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA 244
Score = 43.6 bits (98), Expect = 7e-04
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = -2
Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTK 405
+ EPE I+ WREEQ E + A KELE+WY +EQ+ KTK
Sbjct: 104 QSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTK 158
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,616,111
Number of Sequences: 237096
Number of extensions: 2204220
Number of successful extensions: 5444
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5406
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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