Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f21
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121633-1|AAM51960.1|  219|Drosophila melanogaster GM02293p pro...    90   3e-18
AF055900-1|AAC14276.1|  228|Drosophila melanogaster clathrin lig...    90   3e-18
AE014296-3305|AAF49047.1|  219|Drosophila melanogaster CG6948-PA...    90   3e-18
AY119475-1|AAM50129.1| 1470|Drosophila melanogaster GH05619p pro...    30   3.4  
AE014297-2096|AAF55237.2| 1470|Drosophila melanogaster CG31150-P...    30   3.4  

>AY121633-1|AAM51960.1|  219|Drosophila melanogaster GM02293p
           protein.
          Length = 219

 Score = 89.8 bits (213), Expect = 3e-18
 Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
 Frame = -2

Query: 650 SASAFDANGLLDDAPLGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXEML 471
           S  +F+  G   + P+G +        REEPEKI+ WREEQ                E+ 
Sbjct: 76  STGSFEVIGGESNEPVGISGPP---PSREEPEKIRKWREEQKQRLEEKDIEEERKKEELR 132

Query: 470 QIAKKELEDWYKSHEEQISKTKXXXXXXXXXXXRGSESSVEEGNEWARVSELCDFGP--- 300
           Q +KKEL+DW +   E ISKTK                ++E G EW R+++LCDF P   
Sbjct: 133 QQSKKELDDWLRQIGESISKTKLASRNAEKQAATLENGTIEPGTEWERIAKLCDFNPKVN 192

Query: 299 RRGRDVARLRSIVLQLKQ 246
           + G+DV+R+RSI L LKQ
Sbjct: 193 KAGKDVSRMRSIYLHLKQ 210


>AF055900-1|AAC14276.1|  228|Drosophila melanogaster clathrin light
           chain protein.
          Length = 228

 Score = 89.8 bits (213), Expect = 3e-18
 Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
 Frame = -2

Query: 650 SASAFDANGLLDDAPLGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXEML 471
           S  +F+  G   + P+G +        REEPEKI+ WREEQ                E+ 
Sbjct: 76  STGSFEVIGGESNEPVGISGPP---PSREEPEKIRKWREEQKQRLEEKDIEEERKKEELR 132

Query: 470 QIAKKELEDWYKSHEEQISKTKXXXXXXXXXXXRGSESSVEEGNEWARVSELCDFGP--- 300
           Q +KKEL+DW +   E ISKTK                ++E G EW R+++LCDF P   
Sbjct: 133 QQSKKELDDWLRQIGESISKTKLASRNAEKQAATLENGTIEPGTEWERIAKLCDFNPKVN 192

Query: 299 RRGRDVARLRSIVLQLKQ 246
           + G+DV+R+RSI L LKQ
Sbjct: 193 KAGKDVSRMRSIYLHLKQ 210


>AE014296-3305|AAF49047.1|  219|Drosophila melanogaster CG6948-PA
           protein.
          Length = 219

 Score = 89.8 bits (213), Expect = 3e-18
 Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 3/138 (2%)
 Frame = -2

Query: 650 SASAFDANGLLDDAPLGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXXXXXXXXEML 471
           S  +F+  G   + P+G +        REEPEKI+ WREEQ                E+ 
Sbjct: 76  STGSFEVIGGESNEPVGISGPP---PSREEPEKIRKWREEQKQRLEEKDIEEERKKEELR 132

Query: 470 QIAKKELEDWYKSHEEQISKTKXXXXXXXXXXXRGSESSVEEGNEWARVSELCDFGP--- 300
           Q +KKEL+DW +   E ISKTK                ++E G EW R+++LCDF P   
Sbjct: 133 QQSKKELDDWLRQIGESISKTKLASRNAEKQAATLENGTIEPGTEWERIAKLCDFNPKVN 192

Query: 299 RRGRDVARLRSIVLQLKQ 246
           + G+DV+R+RSI L LKQ
Sbjct: 193 KAGKDVSRMRSIYLHLKQ 210


>AY119475-1|AAM50129.1| 1470|Drosophila melanogaster GH05619p protein.
          Length = 1470

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 59   TRL*TTIVFCL-NIINIGLSYIYKNN*CDLRKRTDNIIRYYTNCD 190
            T+L +TI F L NI+N  +  +YK+  C L  +  N ++ YT C+
Sbjct: 1405 TQLSSTIQFDLYNILNFEIYGVYKHQMCGLCSKPLNRMQNYTICE 1449


>AE014297-2096|AAF55237.2| 1470|Drosophila melanogaster CG31150-PA
            protein.
          Length = 1470

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 59   TRL*TTIVFCL-NIINIGLSYIYKNN*CDLRKRTDNIIRYYTNCD 190
            T+L +TI F L NI+N  +  +YK+  C L  +  N ++ YT C+
Sbjct: 1405 TQLSSTIQFDLYNILNFEIYGVYKHQMCGLCSKPLNRMQNYTICE 1449


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,557,942
Number of Sequences: 53049
Number of extensions: 611892
Number of successful extensions: 1838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)