Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f21
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53151-1|AAB37069.1|  226|Caenorhabditis elegans Clathrin light ...    50   2e-06
Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical p...    29   3.1  
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    28   7.2  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   9.5  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   9.5  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   9.5  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   9.5  

>U53151-1|AAB37069.1|  226|Caenorhabditis elegans Clathrin light
           chain protein 1 protein.
          Length = 226

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
 Frame = -2

Query: 569 REEPEKIKIWREEQXXXXXXXXXXXXXXXXEMLQIAKKELEDWYKSHEEQISKTKXXXXX 390
           R E EKI++W+ +Q                E+   AKKELE+WYK  E+ +  +      
Sbjct: 115 RIEAEKIRLWKAQQEQLLSKKDEAEEKKKIELRANAKKELEEWYKQREKTLQLSHDENLK 174

Query: 389 XXXXXXRGSESSVEEGNEWARVSELCD-FGPRRGRDVARLRSIVLQLKQAG 240
                        +   +W  V++L D    + G+D++RL++++  LK AG
Sbjct: 175 NEKSNQELFAKQQDGDAQWETVNKLVDQQKSKSGKDLSRLKTLLAGLKHAG 225


>Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical
           protein F40G12.10 protein.
          Length = 438

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = +1

Query: 262 TIDRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARSAFL 396
           ++ ++R + L RR  KS+S+  +  + P+S L +DP++   + F+
Sbjct: 28  SMSKERGSELSRRPQKSRSNSKQKATGPTSALPTDPKSKIDTTFM 72


>Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 457 KNWRTGTNHMKNRFPKLKLPTGM-----QSEHKLEDLKVVWRKEMNGPG 326
           K   TG +    +F K+ L   M     +SE KLE LK  WRK  NG G
Sbjct: 564 KGVATGPDKTFEQFEKMLLEREMFLKTLKSERKLELLKEKWRKIRNGGG 612


>Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 457 KNWRTGTNHMKNRFPKLKLPTGM-----QSEHKLEDLKVVWRKEMNGPG 326
           K   TG +    +F K+ L   M     +SE KLE LK  WRK  NG G
Sbjct: 564 KGVATGPDKTFEQFEKMLLEREMFLKTLKSERKLELLKEKWRKIRNGGG 612


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 96  LLILACLIFIKIINVIFESGLII**DIIQTVMKISSHFSST*W 224
           +L LACL FI+I  VIF   +I   DI++    + ++++ T W
Sbjct: 32  VLTLACLTFIQINTVIFNFTVICMEDIVED-YNLLTNYTGTHW 73



 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +3

Query: 96  LLILACLIFIKIINVIFESGLII**DIIQTVMKISSHFSST*W 224
           +L LACL FI+I  ++F   +I   D+++    + +++++T W
Sbjct: 281 ILTLACLTFIQINTLLFNFTVICMEDVVEN-YNLLTNYTATHW 322


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +3

Query: 96  LLILACLIFIKIINVIFESGLII**DIIQTVMKISSHFSST*W 224
           +L LACL FI+I  ++F   +I   D+++    + +++++T W
Sbjct: 324 ILTLACLTFIQINTLLFNFTVICMEDVVEN-YNLLTNYTATHW 365


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 367  DLKVVWRKEMNGPGFLSFVTLDPVEEGMWHAYGQLC-FSSSKLDLAQT 227
            DL V W+ E +G G   +      E   W  YGQL  +    ++  QT
Sbjct: 917  DLIVKWKSEGDGRGVYGYHVQFRNENSGWKTYGQLVPYVRDNMEYTQT 964


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 367  DLKVVWRKEMNGPGFLSFVTLDPVEEGMWHAYGQLC-FSSSKLDLAQT 227
            DL V W+ E +G G   +      E   W  YGQL  +    ++  QT
Sbjct: 917  DLIVKWKSEGDGRGVYGYHVQFRNENSGWKTYGQLVPYVRDNMEYTQT 964


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 367  DLKVVWRKEMNGPGFLSFVTLDPVEEGMWHAYGQLC-FSSSKLDLAQT 227
            DL V W+ E +G G   +      E   W  YGQL  +    ++  QT
Sbjct: 917  DLIVKWKSEGDGRGVYGYHVQFRNENSGWKTYGQLVPYVRDNMEYTQT 964


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 367  DLKVVWRKEMNGPGFLSFVTLDPVEEGMWHAYGQLC-FSSSKLDLAQT 227
            DL V W+ E +G G   +      E   W  YGQL  +    ++  QT
Sbjct: 917  DLIVKWKSEGDGRGVYGYHVQFRNENSGWKTYGQLVPYVRDNMEYTQT 964


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,171,161
Number of Sequences: 27780
Number of extensions: 313754
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)