Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f21
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.3  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 217 VLLKWLEIFITVCIISYYIISP 152
           ++L  L I+ITVC+++ +  SP
Sbjct: 320 MILVTLSIWITVCVLNVHFRSP 341


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -3

Query: 190 ITVCIISYYIISPLSKITLIIFINIRQANIN 98
           +TV ++  Y++  +  +TL + + I   N+N
Sbjct: 294 LTVPLLGKYLLFTMVLVTLSVVVTIAVLNVN 324


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 136 LIIFINIRQANINNVQAKH 80
           L++FI ++  ++ N+Q +H
Sbjct: 248 LLVFIGLQSLSLTNIQLEH 266


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 425 LHVICTSPPVLSWLSEAFLASFVLPQHLSLLIFSFVLLAI 544
           LH++     V+ W+   FL +F+     S +  +F+L AI
Sbjct: 51  LHLLYQDVHVMIWIGFGFLMTFLRRYGQSAVGLTFLLGAI 90


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -3

Query: 685 LQTGXTILSKYPVHQ--HLMLTVCWMMLHWDPLQQQYSNKN---VRNLR 554
           L  G T++    V +   L++T  W+ L W+ +  +++  +   VR+LR
Sbjct: 51  LSFGLTLMQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLR 99


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 416 KSVLHVICTSPPVLSWLSEAFLASFVLPQHLSLLIFSFVLLA 541
           +S LH+  TSPP  S  S+A  +    PQ  SLL  +   LA
Sbjct: 668 QSQLHLHLTSPPARSPSSQAQASQ--CPQTASLLSSTHSTLA 707


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 202 LEIFITVCIISYYIISPLSKITLIIFINIRQANINNV 92
           L +  T C     I+SP  ++T+ I+  I + ++N++
Sbjct: 265 LVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSI 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,321
Number of Sequences: 438
Number of extensions: 3963
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)