Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f18
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 27 0.78
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 27 1.0
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 1.0
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 26 1.4
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 2.4
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 4.2
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 4.2
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi... 24 5.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 24 7.3
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 24 7.3
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 24 7.3
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 24 7.3
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 23 9.6
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 23 9.6
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 23 9.6
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 23 9.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 9.6
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 0.78
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 100 FYSPIRDYSKEESPAPKY*TVFLILISC 17
++SP+ D+ K+E AP Y V + ++C
Sbjct: 163 YFSPVNDHYKKEGLAPAYHRVRMCELAC 190
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 1.0
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 151 KKTNPEPWEAYR-NKQYKF 98
K+ NP PW++++ N YKF
Sbjct: 119 KELNPAPWDSFKHNSSYKF 137
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 1.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -3
Query: 241 PLYVCVGIGCGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY 119
PL+V +G G TL++ + PD ++ +PW+ +
Sbjct: 22 PLWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQVCDPWQFF 62
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.2 bits (55), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 157 KIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVL 285
+I Q+YA+ + R L L H EGS S++ GS+L
Sbjct: 81 EISQEYARYSKQKRASLRRYLEKHGKLEGS--MKESSINGSLL 121
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 180 LCVILMYLGTRRPTLNHGRLTGTSSTSSILPSET 79
L +L + TR PT+ G +T S +I+P ET
Sbjct: 522 LLPVLEKVKTREPTVVMGMVTVYISAGAIIPEET 555
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 24.6 bits (51), Expect = 4.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 217 LSPHIHTEGSKPYASSNLRGS 279
L+P IH EG + Y+SS + S
Sbjct: 829 LAPSIHVEGLETYSSSERKDS 849
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 24.6 bits (51), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 92 RIELVLLVPVSLPWFRVG 145
RI VLL+ + LPWF G
Sbjct: 2 RINFVLLITLILPWFVSG 19
>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
Mug66|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.2 bits (50), Expect = 5.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 190 LRLALRNPDVSWNKKTNPEPWEAY 119
L L R+P SW K N PWE +
Sbjct: 83 LLLYERSPKKSWFGKGNTIPWEQW 106
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 153 TRRPTLNHGRL-TGTSSTSSILPSETT 76
T P L H + TS TSS++PS +T
Sbjct: 575 TSTPALTHSITPSNTSYTSSLIPSSST 601
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = -3
Query: 184 LALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKE 68
L+ R +W + PE W A + KFY + + +
Sbjct: 350 LSRRVTSATWGNRQKPEKWNAMDTE--KFYKALSQWGTD 386
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 23.8 bits (49), Expect = 7.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 220 IGCGGAVFYTLRLALRN-PDVSWNK-KTNPEPWEAYR 116
IG G A FYT LRN P+V + ++ P P+ R
Sbjct: 22 IGSGPAAFYTAHRLLRNDPNVKIDMFESRPVPFGLVR 58
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 123 LTGTSSTSSILPSETTLRRNLLPPNTKL 40
+ G SST S S T +RNL+ PN+ +
Sbjct: 3 IAGNSSTISPTFSTPTKKRNLVFPNSPI 30
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 207 PPHPIPTHTYRGIKALCFFKLERLSPC 287
P H IP H I+ +C + +PC
Sbjct: 428 PKHSIPLHFVNRIQRVCKHTIFASNPC 454
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 144 PTLNHGRLTGTSSTSSILPSETTLRRNLLPPNTKLF 37
PT+NH G++ T+++ + R L+P + F
Sbjct: 116 PTINHVPYYGSAGTNALNGGPLSNSRKLIPKRSAKF 151
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 152 VPRYIRITQSQTQSIEHS 205
VPRY + SQT+ I HS
Sbjct: 1115 VPRYALLKPSQTRGILHS 1132
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 23.4 bits (48), Expect = 9.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 139 GWSSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYA 258
G++SC I + A++ ++ + HI+T G+K YA
Sbjct: 213 GYTSCYYIK--FRPGLAQFLQKISELYELHIYTMGTKAYA 250
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 198 NTAPPHPIPTHT 233
+TAPP PIPT T
Sbjct: 1038 STAPPVPIPTST 1049
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,628
Number of Sequences: 5004
Number of extensions: 31534
Number of successful extensions: 97
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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