Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f17
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0375 - 17326824-17326853,17326858-17327057,17327185-17327230     28   6.9  
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499     27   9.2  

>10_08_0375 - 17326824-17326853,17326858-17327057,17327185-17327230
          Length = 91

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
 Frame = -1

Query: 343 FNQENKVLLVFFFIKDEV---SFTN-DNIQYVCKSLSFIIS 233
           F+ +NKV+ +  F+ DE+   +F + DNI+  C+ L+ +I+
Sbjct: 14  FSVDNKVVFLLEFVPDEIRDNAFVSPDNIRRHCRGLAVLIT 54


>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
          Length = 454

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 100 PFGS*KRLCAAFCAKFGLAKLASVVLYML 14
           PFGS +R+C  F   +GLA +  V++ ML
Sbjct: 382 PFGSGRRMCPGF--NYGLASMELVLVAML 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,377
Number of Sequences: 37544
Number of extensions: 216157
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)