Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f17
(625 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93565-1|AAC51264.1| 1275|Homo sapiens putative p150 protein. 32 1.4
U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein. 32 1.9
X52235-2|CAA36480.1| 712|Homo sapiens protein ( Human DNA for L... 31 2.5
U93574-2|AAC51279.1| 1275|Homo sapiens putative p150 protein. 31 2.5
U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein. 31 2.5
U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein. 31 2.5
U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein. 31 2.5
U93568-2|AAC51269.1| 1275|Homo sapiens putative p150 protein. 31 2.5
U93567-2|AAC51267.1| 1275|Homo sapiens putative p150 protein. 31 2.5
U93564-2|AAC51263.1| 1275|Homo sapiens putative p150 protein. 31 2.5
U09116-2|AAB60345.1| 1275|Homo sapiens ORF2 protein. 31 2.5
M80343-2|AAB59368.1| 1275|Homo sapiens protein ( Human transposo... 31 2.5
M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein. 31 2.5
M22334-1|AAA88038.1| 641|Homo sapiens unknown protein protein. 31 2.5
M22333-1|AAA88037.1| 1192|Homo sapiens unknown protein protein. 31 2.5
L27428-1|AAB02291.1| 361|Homo sapiens reverse transcriptase pro... 31 2.5
AF421375-1|AAL50637.1| 1275|Homo sapiens unknown protein. 31 2.5
AF149422-2|AAD38785.1| 1275|Homo sapiens unknown protein. 31 2.5
AF148856-2|AAD39215.1| 1275|Homo sapiens unknown protein. 31 2.5
AK124194-1|BAC85800.1| 164|Homo sapiens protein ( Homo sapiens ... 30 5.8
>U93565-1|AAC51264.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 1.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W+KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWVKDM 1076
>U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + +W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKNWAKDM 1076
>X52235-2|CAA36480.1| 712|Homo sapiens protein ( Human DNA for
LINE-1 transposable element ORFI and II. ).
Length = 712
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 490 IYNELKQIYKKKTNNPIKKWAKDM 513
>U93574-2|AAC51279.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>U93570-2|AAC51273.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>U93568-2|AAC51269.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>U93567-2|AAC51267.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>U93564-2|AAC51263.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>U09116-2|AAB60345.1| 1275|Homo sapiens ORF2 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>M80343-2|AAB59368.1| 1275|Homo sapiens protein ( Human transposon
L1.2. ).
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>M22334-1|AAA88038.1| 641|Homo sapiens unknown protein protein.
Length = 641
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 419 IYNELKQIYKKKTNNPIKKWAKDM 442
>M22333-1|AAA88037.1| 1192|Homo sapiens unknown protein protein.
Length = 1192
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 970 IYNELKQIYKKKTNNPIKKWAKDM 993
>L27428-1|AAB02291.1| 361|Homo sapiens reverse transcriptase
protein.
Length = 361
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 139 ICNELKQIYKKKTNNPIKKWAKDM 162
>AF421375-1|AAL50637.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>AF149422-2|AAD38785.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>AF148856-2|AAD39215.1| 1275|Homo sapiens unknown protein.
Length = 1275
Score = 31.5 bits (68), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ NE + KKKTNN + W KDM
Sbjct: 1053 IYNELKQIYKKKTNNPIKKWAKDM 1076
>AK124194-1|BAC85800.1| 164|Homo sapiens protein ( Homo sapiens
cDNA FLJ42200 fis, clone THYMU2034647. ).
Length = 164
Score = 30.3 bits (65), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 279 LVNETSSLIKKKTNNTLFSWLKDM 350
+ E + KKKTNN++ +W KDM
Sbjct: 59 IYKELKQIYKKKTNNSIRNWAKDM 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,227,384
Number of Sequences: 237096
Number of extensions: 1241005
Number of successful extensions: 1925
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1925
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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