Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f17
         (625 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051437-1|AAK92861.1|  356|Drosophila melanogaster GH10770p pro...    31   0.96 
AE014297-1170|AAX52945.1|  356|Drosophila melanogaster CG14683-P...    31   0.96 
AE014297-1169|AAO41540.1|  356|Drosophila melanogaster CG14683-P...    31   0.96 

>AY051437-1|AAK92861.1|  356|Drosophila melanogaster GH10770p
           protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 125 RPAHVAHTTIWFLKTFVRSLLREVRTRQVSVGRIVHVDGNI 3
           RPAH A  T   ++ FV + L E+    V    I+ VDG +
Sbjct: 230 RPAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRL 270


>AE014297-1170|AAX52945.1|  356|Drosophila melanogaster CG14683-PB,
           isoform B protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 125 RPAHVAHTTIWFLKTFVRSLLREVRTRQVSVGRIVHVDGNI 3
           RPAH A  T   ++ FV + L E+    V    I+ VDG +
Sbjct: 230 RPAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRL 270


>AE014297-1169|AAO41540.1|  356|Drosophila melanogaster CG14683-PA,
           isoform A protein.
          Length = 356

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 125 RPAHVAHTTIWFLKTFVRSLLREVRTRQVSVGRIVHVDGNI 3
           RPAH A  T   ++ FV + L E+    V    I+ VDG +
Sbjct: 230 RPAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRL 270


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,149,536
Number of Sequences: 53049
Number of extensions: 396715
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)