Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f17
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.6  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 289 SFTNDNIQYVCKSLSFIISYKQKSINSKPIKIDC 188
           ++ N+N    CK L + I+Y ++     P+ I C
Sbjct: 99  NYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYC 132


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 206  TDKNRL*YLIE*RDDCVYIESIPSLDLRPAHV 111
            TDK    Y++  RD+  Y E I  + LR A V
Sbjct: 1096 TDKQVEAYMLSLRDENRYHEDIFGITLRTAEV 1127


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 130 TSAPRTLLIPPFGS*KRLC 74
           T+    LL+ PFG+ +R+C
Sbjct: 448 TTPHSPLLVAPFGAGRRIC 466


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 134 LDLRPAHVAHTTIWFLKTFVR 72
           LD  P H +H   WF K+  R
Sbjct: 118 LDFVPNHSSHEHPWFKKSVQR 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,492
Number of Sequences: 438
Number of extensions: 2750
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)