Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f16
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical pr... 206 2e-53
AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical... 206 2e-53
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 29 3.3
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 29 4.4
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 28 5.8
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 28 5.8
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 28 5.8
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 28 5.8
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 28 5.8
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 28 7.7
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 28 7.7
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 7.7
>Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 206 bits (502), Expect = 2e-53
Identities = 104/238 (43%), Positives = 148/238 (62%), Gaps = 2/238 (0%)
Frame = -2
Query: 714 VVSILTSNKVVLDVYLGKDGVVAHAKKGSLXIDSSTIDPNVPKQIFPIALEKGLGFTDAP 535
++++L S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP
Sbjct: 61 IITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAP 120
Query: 534 VSGGVMGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMG 358
+SGGV GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNML+G
Sbjct: 121 ISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLG 180
Query: 357 ITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGF 178
I +A AE MN+GI MGL+ K L ++N SS R WS++ Y PVPG++ PS R Y GGF
Sbjct: 181 IQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGF 240
Query: 177 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIV-QSRGYGQKDFSFVFQLLKEEN 7
LM KDL LA + ++P P+G++A Q+YRI+ + Y KDF V+Q LK++N
Sbjct: 241 GTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQFLKKQN 298
>AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 206 bits (502), Expect = 2e-53
Identities = 104/238 (43%), Positives = 148/238 (62%), Gaps = 2/238 (0%)
Frame = -2
Query: 714 VVSILTSNKVVLDVYLGKDGVVAHAKKGSLXIDSSTIDPNVPKQIFPIALEKGLGFTDAP 535
++++L S+ V VY G+ G+ + G+L +DSSTID V ++ A + DAP
Sbjct: 61 IITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAP 120
Query: 534 VSGGVMGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMG 358
+SGGV GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNML+G
Sbjct: 121 ISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLG 180
Query: 357 ITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGF 178
I +A AE MN+GI MGL+ K L ++N SS R WS++ Y PVPG++ PS R Y GGF
Sbjct: 181 IQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGF 240
Query: 177 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIV-QSRGYGQKDFSFVFQLLKEEN 7
LM KDL LA + ++P P+G++A Q+YRI+ + Y KDF V+Q LK++N
Sbjct: 241 GTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQFLKKQN 298
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 392 CPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 571
C E ICPQ P + GR + +PPA +R P T + P+P S+
Sbjct: 991 CEECICPQ-TAPTPPHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQP 1049
Query: 572 IGKICLGT 595
+ + T
Sbjct: 1050 PRQFAVNT 1057
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 359 PINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPP 484
P N LL+ A+ CP+ NC ITL RD +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 272 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 439
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 272 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 439
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 272 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 439
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 272 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 439
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 272 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 439
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 658 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 712
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 177 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYG 52
+++L++K++++ +G GI P G + Q + GYG
Sbjct: 459 RDDLLIKNVKIQNGAGSGIDFMTPTGNIELQNIEVKNMGGYG 500
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 528 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 355
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 354 TGMAT 340
AT
Sbjct: 325 PQCAT 329
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 528 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 355
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 354 TGMAT 340
AT
Sbjct: 325 PQCAT 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,555,619
Number of Sequences: 27780
Number of extensions: 423978
Number of successful extensions: 1198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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