Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f15
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803     29   2.2  
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966...    29   3.8  

>01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803
          Length = 298

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 127 LSPTV-HDRYEVEQDNGIKEIYGDNRADFSVVLQVLVVRNEND 252
           L P + H  +  E+DN I  +YG+  + +SV+   L  R +ND
Sbjct: 62  LRPAIRHGGFTDEEDNLILSLYGEMGSKWSVIASKLPGRTDND 104


>05_04_0393 -
           20895485-20895645,20895750-20896358,20896541-20896616,
           20896729-20896920,20897118-20897438,20897880-20898119,
           20898205-20898522,20898621-20898678,20898778-20898936,
           20900090-20900308,20900400-20900614
          Length = 855

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 234 NKNLENNAEISS-VISIYFLYTIVLFYFISVVNSRRQEMTADEFTYSSR 91
           N + +   E++  V+ ++F   IVL +F++ ++SR Q +  D    ++R
Sbjct: 97  NASPKGGLEVADIVVDLFFAVDIVLTFFVAYIDSRTQLLVRDRRRIATR 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,641
Number of Sequences: 37544
Number of extensions: 299773
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)