Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f13
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 47 3e-06
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 41 1e-04
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 37 0.003
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 30 0.26
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 0.45
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 28 1.0
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 26 4.2
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 26 4.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 5.5
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 7.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.6
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 9.6
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 25 9.6
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 46.8 bits (106), Expect = 3e-06
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Frame = -1
Query: 566 DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 387
D T W+ G + T+L ++G D+ G G +P EL VRW + +F P
Sbjct: 600 DTMTTWEHLRGS---IPTVLTNGISGMAFSGADVAGFFG---NPDAELFVRWYETAIFYP 653
Query: 386 TLQ-YSFV------PWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 228
+ ++ + PW + E + R+ + A S G P+ P +
Sbjct: 654 FFRAHAHIDTKRREPWLYGEPYTSLVRELLRIRYRLLPTWYTAFYNSHTHGFPILYPQFL 713
Query: 227 LDPTDQDALAVWDEFLLGER-VLAAPVLQQGAVSRDVYL 114
+ P D++ A+ D+F +G+ +L PV +YL
Sbjct: 714 MHPEDEEGFAIDDQFYVGDSGLLVKPVTHPSIDKITIYL 752
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 41.1 bits (92), Expect = 1e-04
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Frame = -1
Query: 533 LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ----YSFV 366
+ + ++++L NL G +V D+ G YN + +EL RW+ F+P + +
Sbjct: 680 MVSSISSILTFNLLGIPMVGADVCG---YNGNTDEELCARWMALGAFLPFYRNHNSLGSI 736
Query: 365 PWDHDEEA--VEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVW 192
P + A E R + M + GTP+ P+++ P +V
Sbjct: 737 PQEPFRWASVAEASRSAIEIRYSLLPYWYTLMHTASVDGTPMVRPLFFEFPKQISLASVD 796
Query: 191 DEFLLGERVLAAPVLQ 144
+F++G +L +P L+
Sbjct: 797 KQFMIGTALLISPALE 812
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 36.7 bits (81), Expect = 0.003
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Frame = -1
Query: 566 DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 387
D +LW + + ++ ++ N+ G +V D+ G G ++ +EL RW+ F P
Sbjct: 647 DNHSLW---SNMFFSISGMIVFNMMGIPMVGADVCGFLGDSD---EELCSRWMAMGAFSP 700
Query: 386 -------TLQYSFVPWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 228
Q S P+ A E R+ ++ M + Q GTP ++
Sbjct: 701 FYRNHNNIYQISQEPYTWSSVA-EASRRAMYIRYSLLPYWYTIMAKASQDGTPALRALFV 759
Query: 227 LDPTDQDALAVWDEFLLGERVLAAPVLQ 144
P D V +F++G+ +L PVL+
Sbjct: 760 EFPNDPTLADVDRQFMVGDSLLVTPVLE 787
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 30.3 bits (65), Expect = 0.26
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Frame = -1
Query: 566 DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 387
D +LW + + + L N+ G +V D+ G G + +EL RW+ F+P
Sbjct: 669 DNYSLW---SNMIFSIPGALTFNMVGLPMVGADVCGFMGNTD---EELCSRWMALGAFLP 722
Query: 386 TLQ-------YSFVPWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 228
+ S P+ E E R ++ M + +G P+ P+++
Sbjct: 723 FYRNHNSLGSISQEPY-RWESVAESSRCAMNIRYSLLPYWYTLMYEASSQGLPLIRPLFF 781
Query: 227 LDPTDQDALAVWDEFLLGERVLAAPVLQ 144
P + +F++G +L PVL+
Sbjct: 782 EFPNEPSLANADRQFMVGSALLVTPVLE 809
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.5 bits (63), Expect = 0.45
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = -1
Query: 512 LLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQYSFVPWDHDEEAVEI 333
+++ ++ Y+L+L + E + +L+ Q + ++P +PWDH +
Sbjct: 87 VMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQ 146
Query: 332 CRKYTHLHAE 303
YT H E
Sbjct: 147 EDAYTGQHGE 156
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 305 EYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDEFLL-GERVLAAPVLQQGAVS 129
+Y D + A A+ Q G L+ D ++L++W +F+L G + P+ G++S
Sbjct: 48 KYIDALFLASSATTQTG---------LNSVDLNSLSIWQQFILYGFTAITVPIWMHGSIS 98
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 395 FMPTLQYSFVPWDHDEEAVEICRKYTHLH 309
F+P + + + D E+A+++ + Y HLH
Sbjct: 856 FLPEIVRALLLLDKREQAIDLVKTYGHLH 884
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 231 PDGRVHGSSFLDGRLHSGHDLISIFGVKMRVFAADFY 341
P+G+ H S + G +++ ++ +IFG M F DF+
Sbjct: 84 PNGKGHYPSGIRGLVNAASNIGNIFGQLMFGFMGDFF 120
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 164 LAAPVLQQGAVSRDVYLPRGSWRDGVTGELHQGPL 60
+AAP G VS + RG+W + H+GP+
Sbjct: 239 IAAPNAMNGPVSCVSIIERGTWTSEINLIGHEGPV 273
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 148 STGAASTRSPNKNSSQTAKASWSVGSNHQMGGFT 249
+TG+A+T S + +SS ++ +S S S+ GFT
Sbjct: 372 ATGSATTTSYSSDSSASSSSSSSHESSAASNGFT 405
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 569 VDKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMI 462
+DKD +F++G+A++ TL+ L L++ DMI
Sbjct: 879 IDKD---EFSSGIASIRGTLMSSVLPDAPLIIRDMI 911
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +1
Query: 151 TGAASTRSPNKNSSQTAKASWSVGSN 228
T A S+++ +KNS T++ +W++ S+
Sbjct: 832 TQALSSKNLSKNSFMTSRVNWAIQSS 857
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 9.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 227 LDPTDQDALAVWDE 186
LDP+D D + WDE
Sbjct: 249 LDPSDMDVMDTWDE 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,201
Number of Sequences: 5004
Number of extensions: 66655
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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