Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f13
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 52 3e-07
AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical ... 51 8e-07
U40800-5|AAO91743.1| 936|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z66522-2|CAA91407.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.54
AL033514-6|CAA22096.2| 373|Caenorhabditis elegans Hypothetical ... 29 2.2
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 29 2.9
>Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical
protein F53F4.8 protein.
Length = 856
Score = 52.4 bits (120), Expect = 3e-07
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Frame = -1
Query: 533 LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQYSFVPWDH 354
L T V + NL G V D+ G G + ++EL +RW Q F + +
Sbjct: 528 LRTSVIGAQEFNLFGIPYVGSDVCGFLG---TSNEELCLRWQQMGAFHSFFRNHNTLGEP 584
Query: 353 DEE-----AVEICRKYTHLHA-EYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVW 192
++ +V K +L +Y + + + + G V P+++ PTD L +
Sbjct: 585 AQDPAVWPSVAAATKIANLFRYQYLPHLFSLHFQASKDGLTVVRPVFFEFPTDSATLDLG 644
Query: 191 DEFLLGERVLAAPVLQQGAVSRDVYLPRGSW 99
+F+ G +L APV+ QGAVS +YLP W
Sbjct: 645 YQFMWGSGILVAPVVYQGAVSTSLYLPNDVW 675
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 52.4 bits (120), Expect = 3e-07
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Frame = -1
Query: 533 LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ-YSFVPWD 357
L T V + NL G V D+ G G + ++EL +RW Q F + ++ +
Sbjct: 595 LRTSVIGAQEFNLFGIPYVGSDVCGFIG---TTTEELCLRWQQMGAFHSFFRNHNTIGAP 651
Query: 356 HDEEAV-----EICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVW 192
+ AV +K +Y + + + G V P+++ PTD + +
Sbjct: 652 AQDPAVWPSVAAATKKANLFRYQYLPYLFSLHFTASLSGATVIRPVFFEYPTDAETFNLG 711
Query: 191 DEFLLGERVLAAPVLQQGAVSRDVYLPRGSW 99
EF+ G R+L APV+ QG S + YLP W
Sbjct: 712 YEFMWGSRILVAPVIYQGTTSVNAYLPTDRW 742
>AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical
protein F52D1.1 protein.
Length = 903
Score = 50.8 bits (116), Expect = 8e-07
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 12/165 (7%)
Frame = -1
Query: 521 VTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ-YSF------VP 363
+ LL ++ G V D+ G+ +P +ELLVRW QA F P + +S P
Sbjct: 582 IPMLLSLSTAGLPFVGADV---GGFFGNPDEELLVRWYQAGAFQPFFRGHSHQDTKRREP 638
Query: 362 WDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDE- 186
W + E R + + G PV P W D+ + WDE
Sbjct: 639 WLFADNTTEAIRNAIKTRYAFLPYWYTLFYEHAKTGKPVMRPFWMEFIEDEPS---WDED 695
Query: 185 --FLLGERVLAAPVLQQGAVSRDVYLP--RGSWRDGVTGELHQGP 63
+++G +L PVL++ +YLP R W D T + P
Sbjct: 696 RQWMVGNGLLVKPVLEEKVKELSIYLPGKRQVWYDWETHKARPSP 740
>U40800-5|AAO91743.1| 936|Caenorhabditis elegans Hypothetical protein
D2096.3 protein.
Length = 936
Score = 49.6 bits (113), Expect = 2e-06
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Frame = -1
Query: 533 LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQYSFVPWDH 354
L T V +++ N+ G V D+ G NG + ++EL +RW Q F P +
Sbjct: 600 LQTSVIGVMEFNMFGVPYVGSDICGFNGVS---NEELCLRWHQFGAFSPFSRDHNSEGMP 656
Query: 353 DEE-----AVEICRKYTHLHAEYADEIVAAMEASIQK-GTPVNPPIWWLDPTDQDALAVW 192
D++ +V K Y + ++ + + G V P+++ P D++ L +
Sbjct: 657 DQDPAVWPSVANAAKIALTFRYYFLPFLYSLHYNAARYGHTVIRPLFFEFPKDEETLNIS 716
Query: 191 DEFLLGERVLAAPVLQQGAVSRDVYLPRGSW 99
++FL G ++ AP L QG S Y P +W
Sbjct: 717 EQFLWGSALMIAPALYQGQTSVHAYFPSDTW 747
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical protein
F40F9.6b protein.
Length = 910
Score = 48.0 bits (109), Expect = 6e-06
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Frame = -1
Query: 509 LQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ-YSFV------PWDHD 351
L +++ G V D+ G+ +P ++LL RW Q F P + ++ + PW
Sbjct: 594 LSLSIAGVPFVGADV---GGFFGNPDEQLLSRWYQTAAFQPFFRAHAHIDTRRREPWLFS 650
Query: 350 EEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDEFLLGE 171
E+ +I R+ + + G P P+++ D L ++++G
Sbjct: 651 EQTQQIIREALRTRYALLPYWYTLFQQHTENGVPPMRPLFYEFENDDLLLEEQKQWMVGS 710
Query: 170 RVLAAPVLQQGAVSRDVYLPRGS-----WRDGVTGELHQGPLWLRDXPGT 36
+LA PV+++ + V LPRG W + V+G +G D P T
Sbjct: 711 GILARPVVEKDTFNVQVKLPRGEHKTERWFEWVSGNEVRGESIYVDAPIT 760
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical protein
F40F9.6a protein.
Length = 924
Score = 48.0 bits (109), Expect = 6e-06
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Frame = -1
Query: 509 LQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ-YSFV------PWDHD 351
L +++ G V D+ G+ +P ++LL RW Q F P + ++ + PW
Sbjct: 608 LSLSIAGVPFVGADV---GGFFGNPDEQLLSRWYQTAAFQPFFRAHAHIDTRRREPWLFS 664
Query: 350 EEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDEFLLGE 171
E+ +I R+ + + G P P+++ D L ++++G
Sbjct: 665 EQTQQIIREALRTRYALLPYWYTLFQQHTENGVPPMRPLFYEFENDDLLLEEQKQWMVGS 724
Query: 170 RVLAAPVLQQGAVSRDVYLPRGS-----WRDGVTGELHQGPLWLRDXPGT 36
+LA PV+++ + V LPRG W + V+G +G D P T
Sbjct: 725 GILARPVVEKDTFNVQVKLPRGEHKTERWFEWVSGNEVRGESIYVDAPIT 774
>Z66522-2|CAA91407.1| 408|Caenorhabditis elegans Hypothetical
protein F14E5.4 protein.
Length = 408
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 389 PTLQYSFVPWDHDEEAVEICRKYTH-LHAEYADEIVAAMEASIQKGTPVNPPI 234
P SF PW EE + C KYTH + +Y + A + G P+ P I
Sbjct: 155 PDFGGSFHPWTIYEEFIANCLKYTHPVFKQYPFHTIEAHINEYKNGIPLPPLI 207
>AL033514-6|CAA22096.2| 373|Caenorhabditis elegans Hypothetical
protein Y75B8A.6 protein.
Length = 373
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 404 PVATSPATPYSETHYNHFLRSYQAAPTCTR*GSFAIES*PTSRDRC*SPKGCLCQPCGR 580
P+ + ATP + N +S + P TR + TSR RC +GC C+PCG+
Sbjct: 46 PLQAASATPPVPSSMNRS-QSRASCPQSTR--EMSSHRSTTSR-RCGVCRGCQCKPCGQ 100
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +2
Query: 152 PGQPARALLTRTRPKQPKRPGR----*DPTTR 235
P QPA+ +T T P++PKR + DPTT+
Sbjct: 119 PAQPAQQQMTHTAPQEPKRQRKALEIVDPTTK 150
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +2
Query: 152 PGQPARALLTRTRPKQPKRPGR----*DPTTR 235
P QPA+ +T T P++PKR + DPTT+
Sbjct: 119 PAQPAQQQMTHTAPQEPKRQRKALEIVDPTTK 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,779,603
Number of Sequences: 27780
Number of extensions: 414930
Number of successful extensions: 1375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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