Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f10
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   3.8  
SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr ...    26   5.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   5.0  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 436 E*LIYLISPALIISYSLYQSHTFVYFTNSSKMSSLSHTN 320
           E L Y+ +    I  + Y SHTF+     S  +S+S+TN
Sbjct: 413 ETLTYVTTLTETILTTTYDSHTFLTTITPSPSNSISYTN 451


>SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 68

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 751 EDISISLPEQKVSVXSTLSADDLLEIIKKTGKK 653
           ED SIS+ +Q+V V +    + + + IKKTGK+
Sbjct: 28  EDKSISVEKQEVIVTTDKPYELVEQTIKKTGKE 60


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 212 LQPRFAK*VITGSSILELHNIVYK 283
           LQ  +AK +ITG  I+E +N +YK
Sbjct: 759 LQKSYAKGLITGHGIIEDYNRLYK 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,125
Number of Sequences: 5004
Number of extensions: 60741
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)