Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f10
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0696 + 6152849-6152857,6153676-6153751,6154644-6154804           38   0.011
02_04_0077 - 19491844-19492154,19492456-19492531,19492841-19492852     35   0.060
09_04_0541 + 18437075-18440062                                         30   2.3  
01_06_0769 - 31833788-31834182,31834277-31834352,31834458-31834463     28   9.2  

>08_01_0696 + 6152849-6152857,6153676-6153751,6154644-6154804
          Length = 81

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -3

Query: 751 EDISISLPEQKVSVXSTLSADDLLEIIKKTGKKTTYVGAQ 632
           E   + + EQKV+V   ++ D +L+ + KTGKKT++  A+
Sbjct: 31  ESFDVDIKEQKVTVKGNVTPDAVLQTVSKTGKKTSFWDAE 70


>02_04_0077 - 19491844-19492154,19492456-19492531,19492841-19492852
          Length = 132

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 751 EDISISLPEQKVSVXSTLSADDLLEIIKKTGKKTTY 644
           E   I + +QKV+V   +  +D+ + + KTGKKT++
Sbjct: 32  ETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTSF 67


>09_04_0541 + 18437075-18440062
          Length = 995

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 252 LDPVMTHFANLGCNAHVKHKSKTKIQVDCSKNSYGN*NFSCYNLIYRKGLTLLYL-FAYP 76
           +DPV+  F+  G +   +     K +  CS  S+GN    C N     G T L L FAY 
Sbjct: 424 VDPVIGKFSGKGRSILRQRSKNKKSRFRCSSKSHGNAGVICINGASGIGKTELALEFAYR 483

Query: 75  HA 70
           ++
Sbjct: 484 YS 485


>01_06_0769 - 31833788-31834182,31834277-31834352,31834458-31834463
          Length = 158

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 751 EDISISLPEQKVSVXSTLSADDLLEIIKKTGKK 653
           +D+ I +  QKV+V   +    +L+ +++TG++
Sbjct: 30  DDVEIDMERQKVTVNGNVEQKKVLKAVRRTGRR 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,650
Number of Sequences: 37544
Number of extensions: 319611
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)