Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f10
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-10|AAL00882.1|   69|Caenorhabditis elegans Cu (copper) ch...    31   0.66 
AB017201-1|BAA37144.1|   69|Caenorhabditis elegans copper chaper...    31   0.66 
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    29   4.7  
U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine rece...    29   4.7  
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p...    28   8.2  
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p...    28   8.2  

>L14429-10|AAL00882.1|   69|Caenorhabditis elegans Cu (copper)
           chaperonin protein 1 protein.
          Length = 69

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -3

Query: 739 ISLPEQKVSVXSTLSADDLLEIIKKTGKK 653
           I++  +K++V + L A D+LE +KKTGK+
Sbjct: 36  INVETKKITVTTDLPASDVLEALKKTGKE 64


>AB017201-1|BAA37144.1|   69|Caenorhabditis elegans copper chaperone
           protein.
          Length = 69

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -3

Query: 739 ISLPEQKVSVXSTLSADDLLEIIKKTGKK 653
           I++  +K++V + L A D+LE +KKTGK+
Sbjct: 36  INVETKKITVTTDLPASDVLEALKKTGKE 64


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 668 ENWQEN-HICWCSVELAGWFLIPQNLWPFWMLKIIM 564
           E WQ+   ICW SV+ A WF      W F  +++I+
Sbjct: 237 ETWQKTTEICWNSVKCALWFGFRLVFW-FGFIELIL 271


>U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein244 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +3

Query: 501 TF*LNIVLVYRL*LFIITLFYHNDFEHPKGPQILW--YQKPTS*FY*APTYVVFLPVFLI 674
           TF + + LV  +   I+++ Y N +    G +  W   +KP   F       +FLP FLI
Sbjct: 99  TFYIGVTLVLAMIAAILSI-YENRYHKLFGHKTTWKAVRKPYLIFVYISVPFIFLPPFLI 157

Query: 675 ISSKSSALS 701
           I  + +A S
Sbjct: 158 IPEQENARS 166


>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
           protein T12D8.9b protein.
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 686 FTRNN*ENWQENHICWCSVELA 621
           F RNN + WQE   CW + E+A
Sbjct: 122 FGRNNQKPWQELADCWATSEIA 143


>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
           protein T12D8.9a protein.
          Length = 1181

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 686 FTRNN*ENWQENHICWCSVELA 621
           F RNN + WQE   CW + E+A
Sbjct: 120 FGRNNQKPWQELADCWATSEIA 141


>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
           protein T12D8.9b protein.
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 686 FTRNN*ENWQENHICWCSVELA 621
           F RNN + WQE   CW + E+A
Sbjct: 122 FGRNNQKPWQELADCWATSEIA 143


>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
           protein T12D8.9a protein.
          Length = 1181

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 686 FTRNN*ENWQENHICWCSVELA 621
           F RNN + WQE   CW + E+A
Sbjct: 120 FGRNNQKPWQELADCWATSEIA 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,491
Number of Sequences: 27780
Number of extensions: 331675
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)