Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f06
(256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 2.1
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 25 2.1
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 24 2.8
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 24 3.7
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 3.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 3.7
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 23 4.9
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 23 4.9
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 23 4.9
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 23 4.9
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 23 4.9
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 23 6.4
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 23 6.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 8.5
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 23 8.5
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 23 8.5
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 23 8.5
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 24.6 bits (51), Expect = 2.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 146 FGVPMTGFFIGKFLDDQETLRMTSFRD 66
F VP++ + +LDD+ R FRD
Sbjct: 303 FNVPLSERIVECYLDDENRWRFLRFRD 329
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 152 IWFGVPMTGFFIGKFLDDQETLRMTSF 72
+W G M FF ++D++E ++ SF
Sbjct: 277 VWEGRNMYSFFAFMYVDEKEWEKLKSF 303
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 2.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 61 DLSRKLVILKVSWSSRNLPMKNPVIGTPNQMKRGVMP 171
D+ R ILK SR + P I P Q K G+MP
Sbjct: 136 DMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMP 172
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 2.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 211 VESSTDQSIKWPSSASLLASFGLVFR*QGSS 119
+ESS+ PS++ LL SF F GSS
Sbjct: 327 IESSSSPLRSGPSTSGLLDSFTSAFHTSGSS 357
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 23.8 bits (49), Expect = 3.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 166 MPKMAILYFDLLSFPLASVVPVKK 237
+ K+AI +FD +A +PVKK
Sbjct: 25 LSKLAISFFDQKKNKMADSIPVKK 48
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 3.7
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 79 VILKVSWSSRNL--PMKNPVIGTPNQMKRGVMPKMAILYFDLLSFP 210
+I + +W + + P+ ++ N V + +L FD+ FP
Sbjct: 117 LIRRANWEKKEIGEPLFEAIMACINSRSIAVSEEATVLLFDMADFP 162
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.8 bits (49), Expect = 3.7
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 145 NQMKRGVMPKMAILYFDLL-SFPLASVVPVKKNKRNAY 255
NQ++R + ++L+F LL +F VVP+ +++ +Y
Sbjct: 1759 NQLRRRTFYRYSLLFFALLCTFVAMIVVPLVLDQKLSY 1796
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 23.4 bits (48), Expect = 4.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 250 HYAYFS*LEPHSQVESSTDQSIKWPSSASLLAS 152
H S L PH+Q+ D + PSS S +S
Sbjct: 158 HCPACSNLVPHNQINQHLDSCLNSPSSPSSSSS 190
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 177 HLRHHSSLHLVWCSDDRVLHRQISG 103
HLRHH LH + + H + G
Sbjct: 218 HLRHHVVLHQTTLEERKTYHCPMEG 242
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 76 LVILKVS-WSSRNLPMKNPVIGTPNQMKR 159
++++KV + +RN+ + NP+I +P + R
Sbjct: 402 MLVIKVQLYRARNIEITNPIIVSPVERSR 430
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 23.4 bits (48), Expect = 4.9
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +3
Query: 36 FDSASKQSRLITEARHPQGFLVIQKFAYEEPCHRNTKPNEARSDAEDG 179
FD +S + E HP + I A + R +KP + + + G
Sbjct: 122 FDFSSDSESAVVEQLHPSSPIPILTTAVRKKGSRPSKPQKEKQGNKQG 169
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 196 DQSIKWPSSASLLASFG 146
D SIKWPS + L G
Sbjct: 147 DSSIKWPSKVAALQLLG 163
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 23.0 bits (47), Expect = 6.4
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 19 VGGSPSLTLPPNKADLSRKLVILKVS-WSSRNLPMKNPV 132
+ P+L L PNK D S++LV + +S+ +P +P+
Sbjct: 5 INSEPTLFLFPNKED-SKQLVEKAIEVFSNIKIPSTSPI 42
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 71 RDKSALFGGRVKEGDPPTLAIN 6
+ S LFGGR +PP L I+
Sbjct: 361 KGSSFLFGGRSVSEEPPKLIID 382
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -3
Query: 107 LDDQETLRMTSFRDK 63
+D++E LRM++FR K
Sbjct: 2231 IDEREYLRMSTFRSK 2245
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 1 LSFMARVGGSPSLTLPPNKADLSRKLVILKVS 96
LSF++ + PPN D ++IL+V+
Sbjct: 820 LSFLSFANSQVTSYTPPNSIDRPNDILILEVA 851
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 22.6 bits (46), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 114 AYEEPCHRNTKPNEARSDAED 176
A+E P N +P +ARS +D
Sbjct: 659 AFEAPSTNNAEPVKARSATDD 679
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 22.6 bits (46), Expect = 8.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 129 CHRNTKPNEARSDAEDG 179
CHR+ KP D E+G
Sbjct: 154 CHRDIKPQNLLLDPENG 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,208,604
Number of Sequences: 5004
Number of extensions: 23054
Number of successful extensions: 65
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -