Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f06
(256 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 29 0.52
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 29 0.52
08_02_0350 + 16123139-16124041 28 1.2
11_03_0162 - 10956997-10957323,10957390-10957568,10957823-109579... 27 1.6
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 26 4.8
02_05_0114 + 25958834-25961296 25 6.4
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 25 6.4
01_05_0560 - 23288078-23288370,23288448-23288733 25 6.4
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748... 25 8.4
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 25 8.4
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 25 8.4
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 78 RHPQGFLVIQKFAYEEPCHRNTKPNEARSDAED 176
RH + +VI +F YE+ R +E+++DA+D
Sbjct: 178 RHGRNKVVIDEFGYEDLLRRRHTGHESQNDADD 210
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 29.1 bits (62), Expect = 0.52
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Frame = +1
Query: 25 GSPSLTLPPNK---ADLSRKLVIL-KVSWSSRNLPMKNPVIGT-PNQM------KRGVMP 171
GSPS++LP + A LS L VS+ S NLP NP+ PNQ + ++P
Sbjct: 242 GSPSMSLPSSSYHMAGLSHGLPYGGSVSFGSPNLPGSNPIQNDWPNQANPYAVDQFNLLP 301
Query: 172 KMAILYFDLLSFPLASVVPVKKNKRNA 252
M L + P++S++ ++ +R A
Sbjct: 302 NMLQKQISLPNSPMSSLLFSQQQQRLA 328
>08_02_0350 + 16123139-16124041
Length = 300
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 115 PMKNPVIGTPNQMKRGVMPKMAILYFDLLSFPLASVVP 228
P PV G +++ GV+ + ++ DL +P+A V+P
Sbjct: 197 PCLTPVAGLVDEVPNGVLFDVPMVVLDLDGWPMAHVLP 234
>11_03_0162 -
10956997-10957323,10957390-10957568,10957823-10957922,
10959333-10959397,10959480-10959572,10961062-10961607,
10961627-10961678,10961753-10961884,10963049-10963210,
10963532-10963582
Length = 568
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 49 PNKADLSRKLVILKVSWSSRN 111
PNK +LSR L+++ W +RN
Sbjct: 427 PNKTNLSRLLIVMWQLWKARN 447
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 149 WFGVPMTGFFIGKF 108
WF P T FF+G+F
Sbjct: 874 WFPAPFTSFFLGEF 887
>02_05_0114 + 25958834-25961296
Length = 820
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 185 KMAIFGITPRFIWFGVPMTGFFIGKFLDDQETL 87
+MA G+ P + +G+ + GF G L + E L
Sbjct: 494 RMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVL 526
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 84 PQGFLVIQKFAYEEPCH 134
P GF+V K +EE CH
Sbjct: 614 PYGFVVNNKLLFEEDCH 630
>01_05_0560 - 23288078-23288370,23288448-23288733
Length = 192
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 44 CLQTKQTYHGSSSSSRFLGHPEICL*RTLSSEHQ 145
C K T + SSSSSR G E L L S H+
Sbjct: 59 CQPDKPTLYSSSSSSRLAGDMECQLSCALGSCHR 92
>05_04_0367 -
20672776-20673550,20674097-20674320,20674626-20674843,
20675133-20676534
Length = 872
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 25 GSPSLTLPPNKADLSRK 75
GSP LTLPP++ D +K
Sbjct: 69 GSPVLTLPPSEPDEHKK 85
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +3
Query: 12 GQGWWITFFDSASKQSRLITEARHPQGFLVIQKFAYEEPCHRNTKPNEARSD 167
G G++ITF D S+ + + F +KF E H RSD
Sbjct: 444 GFGYFITFTDDFSRYGYVYLMRHKSESFEKFKKFQNEVQNHLGKTTKYLRSD 495
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 226 EPHSQVESSTDQSIKWPSSASLLAS 152
EPH+ SSTD SI P+SA+ A+
Sbjct: 17 EPHAS-SSSTDASIPAPTSAAAAAA 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,960,313
Number of Sequences: 37544
Number of extensions: 152999
Number of successful extensions: 370
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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