Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f06
         (256 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126234-1|AAI26235.1|  105|Homo sapiens NADH dehydrogenase (ubi...    34   0.072
BC126232-1|AAI26233.1|  105|Homo sapiens NADH dehydrogenase (ubi...    34   0.072
BC104672-1|AAI04673.1|   89|Homo sapiens NDUFB1 protein protein.       34   0.072
BC009691-1|AAH09691.2|   69|Homo sapiens NDUFB1 protein protein.       34   0.072
AF050638-1|AAD42054.1|   58|Homo sapiens NADH-ubiquinone oxidore...    34   0.072
Y14385-1|CAA74743.1| 1258|Homo sapiens inositol polyphosphate 5-...    30   1.2  
L36818-1|AAA96658.1| 1149|Homo sapiens 51C protein protein.            30   1.2  

>BC126234-1|AAI26235.1|  105|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 beta subcomplex, 1, 7kDa protein.
          Length = 105

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 140 VPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPPT 18
           VPM GF IG +LD +   R+T+FR+KS LF   ++  +  T
Sbjct: 64  VPM-GFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVT 103


>BC126232-1|AAI26233.1|  105|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 beta subcomplex, 1, 7kDa protein.
          Length = 105

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 140 VPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPPT 18
           VPM GF IG +LD +   R+T+FR+KS LF   ++  +  T
Sbjct: 64  VPM-GFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVT 103


>BC104672-1|AAI04673.1|   89|Homo sapiens NDUFB1 protein protein.
          Length = 89

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 140 VPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPPT 18
           VPM GF IG +LD +   R+T+FR+KS LF   ++  +  T
Sbjct: 48  VPM-GFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVT 87


>BC009691-1|AAH09691.2|   69|Homo sapiens NDUFB1 protein protein.
          Length = 69

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 140 VPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPPT 18
           VPM GF IG +LD +   R+T+FR+KS LF   ++  +  T
Sbjct: 28  VPM-GFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVT 67


>AF050638-1|AAD42054.1|   58|Homo sapiens NADH-ubiquinone
           oxidoreductase MNLL subunit protein.
          Length = 58

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 140 VPMTGFFIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPPT 18
           VPM GF IG +LD +   R+T+FR+KS LF   ++  +  T
Sbjct: 17  VPM-GFVIGCYLDRKSDERLTAFRNKSMLFKRELQPSEEVT 56


>Y14385-1|CAA74743.1| 1258|Homo sapiens inositol polyphosphate
           5-phosphatase protein.
          Length = 1258

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 52  NKADLSRKLVILKVSWSSRNLPMKNPVI 135
           N A  S  +  LKV WSSR LP   P++
Sbjct: 783 NDAQSSDNINFLKVQWSSRQLPTLKPIL 810


>L36818-1|AAA96658.1| 1149|Homo sapiens 51C protein protein.
          Length = 1149

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 52  NKADLSRKLVILKVSWSSRNLPMKNPVI 135
           N A  S  +  LKV WSSR LP   P++
Sbjct: 719 NDAQSSDNINFLKVQWSSRQLPTLKPIL 746


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,172,443
Number of Sequences: 237096
Number of extensions: 859688
Number of successful extensions: 1589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 76,859,062
effective HSP length: 62
effective length of database: 62,159,110
effective search space used: 1367500420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)