Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f06
(256 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 27 1.8
AL032652-9|CAB76748.1| 267|Caenorhabditis elegans Hypothetical ... 27 1.8
U21317-2|AAA62531.3| 729|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z81571-2|CAB04611.1| 202|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 25 7.4
AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear recep... 25 7.4
AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear recep... 25 7.4
AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear recep... 25 7.4
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 25 7.4
AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormo... 25 7.4
Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 25 9.8
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 25 9.8
U41007-6|AAA82269.2| 348|Caenorhabditis elegans Hypothetical pr... 25 9.8
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 25 9.8
U21309-3|AAN73880.2| 143|Caenorhabditis elegans Hypothetical pr... 25 9.8
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 25 9.8
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -3
Query: 203 LNRSKYKMAIFGITPRFIWFGVPMTGFFIGKFLDDQETLRMTSFRDKSALFG 48
+ + +Y + IF I + FG+ + G + G L L +T R + +FG
Sbjct: 249 VEKEEYLVVIFFIVVTIVLFGLIVHGMYTGSLLRTVFNLVITYLRIIAGIFG 300
>AL032652-9|CAB76748.1| 267|Caenorhabditis elegans Hypothetical
protein Y63D3A.11 protein.
Length = 267
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 127 PVIGTPNQMKRGVMPKMAILYFDLLSFPLASVVPVK 234
P++ P++ R + Y DLLSF L S PVK
Sbjct: 7 PILRLPSKALRTTLQNFE--YLDLLSFSLVSPTPVK 40
>U21317-2|AAA62531.3| 729|Caenorhabditis elegans Hypothetical
protein B0495.5 protein.
Length = 729
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 122 FIGKFLDDQETLRMTSFRDKSALFGGRVKEGDPPTLAIND 3
FIGKFLDD LR + + + G V++G+ A +D
Sbjct: 488 FIGKFLDDNGELRRSVYLGAN----GEVEQGNQEIRAFSD 523
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
protein F54E4.1 protein.
Length = 2948
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 16 RVGGSPSLTLPPNKADLSRKLVILKVSWSSRN 111
R GGS S P +K L KL IL W+ N
Sbjct: 488 RTGGSVSSDAPSSKDILDVKLEILLRQWTKSN 519
>Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical
protein C44F1.5 protein.
Length = 1109
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 117 YEEPCHRNTKPNEARSDAEDGHFIL*SVELSTCECG 224
Y EP HRN + A D + I ++S ECG
Sbjct: 856 YREPVHRNIRAMSAEQDYRNRR-IQSGSDMSDAECG 890
>Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical
protein C44F1.5 protein.
Length = 1109
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 117 YEEPCHRNTKPNEARSDAEDGHFIL*SVELSTCECG 224
Y EP HRN + A D + I ++S ECG
Sbjct: 856 YREPVHRNIRAMSAEQDYRNRR-IQSGSDMSDAECG 890
>Z81571-2|CAB04611.1| 202|Caenorhabditis elegans Hypothetical
protein M01G12.2 protein.
Length = 202
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 206 KLNRSKYKMAIFGITPRFIWFGVPMTGFFIGKFLDDQETLRMT 78
KLN K++ I + P+FI F +P+ F I E L MT
Sbjct: 101 KLNTRKFQRLIDDLVPKFIHFELPV--FKIQSKFFISENLTMT 141
>Z81544-6|CAI46607.1| 376|Caenorhabditis elegans Hypothetical
protein F49C5.9 protein.
Length = 376
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 79 VILKVSWSSRNLPMKNPVIGTPNQMKRGVMPKMAILYFDLLSFPLASV 222
+I K+S + + M+N V + + K A+ FD+ S P+ V
Sbjct: 173 IIFKLSAQNDQVKMQNDVFEKVDPRCAEIFQKHAVFVFDIYSVPMKIV 220
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 173 FGITPRFIWFGVPMTGFFIGKFLDDQET 90
FGI P + W GV + F GK + T
Sbjct: 415 FGIAPGYRWDGVDRSNGFEGKLAKTENT 442
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 89 RFLGHPEICL*RTLSSEHQTK*SEE 163
+F G PE+ T EH TK +EE
Sbjct: 880 KFAGRPELAWTATAIGEHHTKEAEE 904
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 89 RFLGHPEICL*RTLSSEHQTK*SEE 163
+F G PE+ T EH TK +EE
Sbjct: 880 KFAGRPELAWTATAIGEHHTKEAEE 904
>AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 344
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 174 LRHHSSLHLVWCSDDRVLH 118
LRH S+ HLV C+ R +H
Sbjct: 166 LRHFSAQHLVMCAAFRSIH 184
>AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 369
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 174 LRHHSSLHLVWCSDDRVLH 118
LRH S+ HLV C+ R +H
Sbjct: 191 LRHFSAQHLVMCAAFRSIH 209
>AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 234
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 174 LRHHSSLHLVWCSDDRVLH 118
LRH S+ HLV C+ R +H
Sbjct: 56 LRHFSAQHLVMCAAFRSIH 74
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 174 LRHHSSLHLVWCSDDRVLH 118
LRH S+ HLV C+ R +H
Sbjct: 209 LRHFSAQHLVMCAAFRSIH 227
>AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform a protein.
Length = 412
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 174 LRHHSSLHLVWCSDDRVLH 118
LRH S+ HLV C+ R +H
Sbjct: 234 LRHFSAQHLVMCAAFRSIH 252
>Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical
protein F23A7.7 protein.
Length = 965
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 204 LSTCECGSSQEK 239
L CECGS QEK
Sbjct: 188 LEICECGSQQEK 199
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 203 LNRSKYKMAIFGITPRFIWFGVPMTGF 123
L+ SKYK +F + G P++GF
Sbjct: 1550 LDESKYKKKVFAKEGEEVTLGCPVSGF 1576
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 203 LNRSKYKMAIFGITPRFIWFGVPMTGF 123
L+ SKYK +F + G P++GF
Sbjct: 1550 LDESKYKKKVFAKEGEEVTLGCPVSGF 1576
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 203 LNRSKYKMAIFGITPRFIWFGVPMTGF 123
L+ SKYK +F + G P++GF
Sbjct: 1550 LDESKYKKKVFAKEGEEVTLGCPVSGF 1576
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 203 LNRSKYKMAIFGITPRFIWFGVPMTGF 123
L+ SKYK +F + G P++GF
Sbjct: 1550 LDESKYKKKVFAKEGEEVTLGCPVSGF 1576
>U41007-6|AAA82269.2| 348|Caenorhabditis elegans Hypothetical
protein C33H5.10 protein.
Length = 348
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 30 TFFDSASKQSRLITEARHPQGFLVIQK 110
+F DS K +RLIT R G +V +K
Sbjct: 79 SFLDSEVKTARLITRQRIESGEIVSEK 105
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 34 SLTLPPNKADLSRKLVILKVSWSSRNLPMKNPVIGTPNQMKRGVMPKMAI 183
SL+ PP+ + R S SS N+P + + TPN +R + PK +
Sbjct: 40 SLSPPPDDENTIRPP---SSSESSENIPEEPQELITPNTTRRSLGPKPTV 86
>U21309-3|AAN73880.2| 143|Caenorhabditis elegans Hypothetical
protein C13B9.1 protein.
Length = 143
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 204 LSTCECGSSQEK 239
L CECGS QEK
Sbjct: 64 LEICECGSQQEK 75
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 203 LNRSKYKMAIFGITPRFIWFGVPMTGF 123
L+ SKYK +F + G P++GF
Sbjct: 1550 LDESKYKKKVFAKEGEEVTLGCPVSGF 1576
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,652,441
Number of Sequences: 27780
Number of extensions: 130634
Number of successful extensions: 301
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -