Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f06
         (256 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   4.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   4.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   5.5  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    19   7.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    19   7.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   7.2  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 183 NGHLRHHSSLHLVWCSD 133
           N HL+ HS+++   C++
Sbjct: 33  NSHLKSHSNVYQYRCAN 49


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 180 GHLRHHSSLHL 148
           GH + HS++HL
Sbjct: 192 GHRQRHSTIHL 202


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 4/12 (33%), Positives = 11/12 (91%)
 Frame = +2

Query: 212 LRVWFQSRKISV 247
           +++WFQ+R++ +
Sbjct: 52  IKIWFQNRRMKL 63


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 4/10 (40%), Positives = 10/10 (100%)
 Frame = +2

Query: 212 LRVWFQSRKI 241
           +++WFQ+R++
Sbjct: 52  IKIWFQNRRM 61


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 4/10 (40%), Positives = 10/10 (100%)
 Frame = +2

Query: 212 LRVWFQSRKI 241
           +++WFQ+R++
Sbjct: 52  IKIWFQNRRM 61


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -1

Query: 253 KHYAYFS*LEPHSQVESSTDQS 188
           +HYA ++ + PH+      + S
Sbjct: 771 EHYALYTAMAPHATASEFDEMS 792


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 4/10 (40%), Positives = 10/10 (100%)
 Frame = +2

Query: 212 LRVWFQSRKI 241
           +++WFQ+R++
Sbjct: 314 IKIWFQNRRM 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,372
Number of Sequences: 438
Number of extensions: 1339
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)