Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f05
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 178 3e-45
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 90 2e-18
01_06_0663 - 30991390-30992340 88 7e-18
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 71 7e-13
05_07_0134 - 27911920-27912762 70 2e-12
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 64 1e-10
06_03_0219 - 18227559-18227858,18227864-18228340 35 0.070
02_01_0384 - 2781362-2782299,2782320-2782428 33 0.22
12_02_0842 - 23588826-23589198,23589548-23590203 32 0.38
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801... 31 0.87
07_01_0885 + 7353926-7354770,7354845-7355487 30 1.5
07_03_1086 + 23858419-23859423,23859527-23859610 29 3.5
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 29 4.6
10_08_0633 + 19446075-19446488,19446607-19446975,19447961-194480... 28 6.1
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 28 6.1
06_01_0080 + 644021-645463 28 8.1
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 178 bits (434), Expect = 3e-45
Identities = 99/232 (42%), Positives = 139/232 (59%), Gaps = 12/232 (5%)
Frame = -2
Query: 682 VLDVYLGKDGVVXHAX-KGS-LXIDSSTIDPNVPKQIFP----IALEKGLGFT------D 539
VLDVY G++G++ + G L IDSST+DP ++I L++ + D
Sbjct: 56 VLDVYNGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAEKPMMLD 115
Query: 538 APVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLM 359
APVSGGV A+ L FM GG +E + + PLL MG K +CG G+G VAK+ NNM M
Sbjct: 116 APVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVAKICNNMAM 175
Query: 358 GITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGG 179
I+ + +E +G +G++ VL D+ N SSAR WS++ Y PVPG++ PSSRNYDGG
Sbjct: 176 AISMLGVSEAFALGQNLGIKASVLTDIFNCSSARCWSSDTYNPVPGVMMDVPSSRNYDGG 235
Query: 178 FKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 23
F ++LM KDL+LA A G+ P G+ A ++YR + + G KDFS F+
Sbjct: 236 FTSKLMTKDLDLAMASASGVGFNCPFGSQALEIYRKLCADGCELKDFSCAFR 287
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 89.8 bits (213), Expect = 2e-18
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Frame = -2
Query: 562 EKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVA 383
+KG F +APVSG A++ L +A G K ++ +P V+G K F G+IG+G
Sbjct: 110 QKGGAFVEAPVSGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKM 169
Query: 382 KLTNNMLMGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAP 203
KL NM+MG A +E +++ GL P+ LLDVL+ + + P+ L +
Sbjct: 170 KLVVNMIMGSMMNALSEGLSLADNSGLSPQTLLDVLDLGAIAN-------PMFKLKGPSM 222
Query: 202 SSRNYDGGFKNELMVKDLELASGMALGIRSPI--PLGAVATQLYRIVQSRGYGQKDFSFV 29
+Y+ F + KD+ LA +ALG + + P+ A + + ++ +S G G DFS V
Sbjct: 223 LQGSYNPAFPLKHQQKDMRLA--LALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAV 280
Query: 28 FQL 20
+++
Sbjct: 281 YEV 283
>01_06_0663 - 30991390-30992340
Length = 316
Score = 87.8 bits (208), Expect = 7e-18
Identities = 65/202 (32%), Positives = 93/202 (46%)
Frame = -2
Query: 655 GVVXHAXKGSLXIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGG 476
G + G L +D +T DP + +I A K DAPVSGG GA++ATL+ AGG
Sbjct: 99 GALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAKSCAAVDAPVSGGDRGARSATLSIFAGG 158
Query: 475 RKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKMGLEP 296
R PL K+MG + G G+GQ AKL N + + T + E M K GL+
Sbjct: 159 DAAVVARLAPLFKLMG-NALYMGGPGAGQRAKLGNQIAIASTMVGLVEGMVYAHKAGLDV 217
Query: 295 KVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIR 116
L+ ++ +A S S ++Y R+ GF VKDL + +
Sbjct: 218 AKWLEAISTGAAGSKSLDLY-------GKRMLERDMAAGFYVRHFVKDLGICLSECQAMG 270
Query: 115 SPIPLGAVATQLYRIVQSRGYG 50
+P A+A QLY + + G G
Sbjct: 271 LALPGLALAHQLYVSLLAHGEG 292
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 71.3 bits (167), Expect = 7e-13
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 2/228 (0%)
Frame = -2
Query: 679 LDVYLGKDGVVXHAXKGSLXIDSSTIDPNVPKQIFPIALEKGLGFTD-APVSGGVMGAQN 503
++V G +G G +D ST+D K I G F + S +G
Sbjct: 121 VEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLERCDFSSCTVGPML 180
Query: 502 ATLAFMA-GGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECM 326
F + + ++ + + +F G +G G KL NM+MG ++ +E +
Sbjct: 181 TRYLFSRLQFQAQKSQQKMGCSSFLPQSRFFLGDVGKGADMKLVVNMVMGSMMVSFSEGL 240
Query: 325 NMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 146
+ K+GL+P L++V++ + + P+ L + Y F + KDL
Sbjct: 241 LLSEKVGLDPNTLVEVISQGA-------ISAPMFSLKGPSMVKAAYPTAFPLKHQQKDLR 293
Query: 145 LASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLPERRKQ 2
LA +A + IP A A +LY++ +S G +DFS V + + ++Q
Sbjct: 294 LALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAVIEALKAKEQ 341
>05_07_0134 - 27911920-27912762
Length = 280
Score = 69.7 bits (163), Expect = 2e-12
Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 2/227 (0%)
Frame = -2
Query: 685 VVLDVYLGKDGVVXHAXKGSLXIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQ 506
VVLD GV+ G + +D ++ P++ +++ A G D+PVSGG +GA+
Sbjct: 59 VVLDA---ASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGAR 115
Query: 505 NATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECM 326
+ LA +AGG + PL +G + + G GSGQ +K+ N + + + +E +
Sbjct: 116 DGALALLAGGDEAVVSWLAPLFAHLG-RPTYMGPPGSGQSSKIANQIAVAGAVVGASEAL 174
Query: 325 NMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 146
GL+ + LD ++ +A S +++ R + G + ++KDL
Sbjct: 175 AFANAAGLDAPLFLDAVSKGAAGSRVMDIF-------GERMLRREFASGGSVKYIIKDLG 227
Query: 145 LASGMALGIR--SPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLPER 11
+A G +P A+ Q++ + + G G + + ER
Sbjct: 228 MALETEEGPEGAKALPGAAMFRQMFSAMAANGDGDLSLQGLITVVER 274
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 64.1 bits (149), Expect = 1e-10
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 3/224 (1%)
Frame = -2
Query: 676 DVYLGKDGVVXHAXKGSLXIDSSTIDPN-VPKQIFPIALE-KGLGFTDAPVSGGVMGAQN 503
+V G G V G+ I SST+ P V K + E + + DAPVSGGV A
Sbjct: 395 NVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDAPVSGGVKRAAE 454
Query: 502 ATLAFMAGGRKEDFERSLPLLKVMGAKQFHC-GQIGSGQVAKLTNNMLMGITGMATAECM 326
TL +K + S+ + + K + G G+ K+ N +L G+ + AE M
Sbjct: 455 GTLT--TNMQKLVHDCSIFYVTALSEKLYVIKGGCGAASSVKMVNQLLAGVHIASAAEAM 512
Query: 325 NMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 146
G ++ L + L +++ ++ SW VP ++ +Y ++ VKDL
Sbjct: 513 AFGARLNLRTRRLFEIIQHARGYSWMFGNR--VPHML-----DNDYTPYSAVDIFVKDLG 565
Query: 145 LASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQLPE 14
+ S + R P+ + ++A QL+ + G+G+ D + V ++ E
Sbjct: 566 IVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFDDAAVVKVYE 609
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 34.7 bits (76), Expect = 0.070
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = +3
Query: 342 AIPVMPINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMT 521
++PV+PI+ L V+L + P P C A T+RR S PP R+A P
Sbjct: 56 SLPVVPIH-LPVALLSLPRCRPPPAACAAS-TVRRPAAPSPPPASPPPPPPRLALRFPRR 113
Query: 522 PPDTGASVNPSPFS 563
PP+ PS FS
Sbjct: 114 PPELPPRRRPSRFS 127
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/74 (31%), Positives = 30/74 (40%)
Frame = +3
Query: 378 SLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSP 557
S A P P++ +T R LS ++ PA +R P +PP GAS P
Sbjct: 180 SSAIPPPATAPRFPPPRAMTARTALALSPTTSASPASPSRTRLAPPRSPPAGGASGAPRR 239
Query: 558 FSRAIGKICLGTFG 599
S A C G G
Sbjct: 240 SSSAASPSCAGVEG 253
>12_02_0842 - 23588826-23589198,23589548-23590203
Length = 342
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 198 LDGAVGTSPGTGQYTSVDQERADELFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLV 377
LDG G G+Y + ++ AD+L + +R ++PIL P S + + + L
Sbjct: 128 LDGDERGCAG-GRYDWLLEDFADKLVNDHHRRMMAAPILPPWMSSSPSSSSSPSVTLSLA 186
Query: 378 SLATCPEPICP 410
S A P P P
Sbjct: 187 SAAVAPAPAAP 197
>03_02_0386 +
8009884-8010133,8010274-8010338,8010545-8010658,
8010736-8010895,8010975-8011093,8011209-8011635,
8011834-8012057,8012863-8012973,8013056-8013188,
8013259-8013365,8013430-8013444,8013482-8013571,
8013855-8013917,8013973-8014053,8014136-8014208,
8014312-8014367,8014460-8014554,8014649-8014683,
8015449-8015525
Length = 764
Score = 31.1 bits (67), Expect = 0.87
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = -2
Query: 334 ECMNMGIKMGLEPKVLLDV-LNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMV 158
+C++MG++ G PK+ +DV L + R +V + L+ R+YDG + E M
Sbjct: 484 KCIDMGMEFGTLPKMDVDVPLTSLHIRRTLLDVPKKIDILIVIMADDRSYDG--EIEEMC 541
Query: 157 KDLELASGMALGIRSPIPLGAVATQL-YRIVQS 62
+ L + L S L VA Q+ ++V+S
Sbjct: 542 ESLRIVYVFCLPCLSKRNLKRVARQIQLKVVKS 574
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 268 SSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 146
S+ R W E+YCPV ++ P+ + D + L + LE
Sbjct: 216 SAIRLWKVELYCPVVAMIMEHPAHQTKDEKLQFSLNYQHLE 256
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 659 RWRCGSCXKRIAXDRFEYNRSECSQTDLPYSPRERAGIHR 540
R R SC SEC DL ++P AGIHR
Sbjct: 10 RRRSTSCYSDSGDSSCSEPFSECGSDDLSFTPAAAAGIHR 49
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 512 THDSSRYRCICESQPFL*GYREDLFGNIRIYC 607
+H +S Y + E L +DL GNIR+YC
Sbjct: 370 SHAASGYHKVLEENRKLYNQIQDLRGNIRVYC 401
>10_08_0633 +
19446075-19446488,19446607-19446975,19447961-19448054,
19448137-19448174,19448770-19448916,19449580-19449679,
19449786-19450744,19451143-19451295
Length = 757
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 673 VYLGKDGVVXHAXKGSLXIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATL 494
V +G DG+V G L D + +VP I P + L +T GV +A +
Sbjct: 295 VCVGGDGIVNEVLNGLLCRDDQNVAVSVPIGIIPAGSDNSLVWTVL----GVKDPISAAM 350
Query: 493 AFMAGG 476
+ + GG
Sbjct: 351 SIVRGG 356
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 411 QWNCLAPITLRRG-RDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 569
+W+ AP+ G R+ + L PP A P PP A PSPF A
Sbjct: 236 RWSRAAPLPPHNGERERPRLVLDPPKRDASAT---PTPPPAEAARSRPSPFGAA 286
>06_01_0080 + 644021-645463
Length = 480
Score = 27.9 bits (59), Expect = 8.1
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = -2
Query: 562 EKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLP-LLKV------MGAKQFHCGQ 404
E+GL + VSGG GA+N + M GG E ++ LLKV G + G+
Sbjct: 120 ERGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGK 178
Query: 403 IGSGQVAKLTNN 368
GSG K+ +N
Sbjct: 179 GGSGNFVKMVHN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,112,923
Number of Sequences: 37544
Number of extensions: 535550
Number of successful extensions: 1715
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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