Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f05
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical pr... 192 2e-49
AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical... 192 2e-49
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 29 4.2
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 28 5.5
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 28 5.5
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 28 5.5
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 28 5.5
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 28 5.5
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 28 7.3
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 7.3
Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 9.6
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 9.6
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 9.6
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 9.6
AC006610-1|AAK85447.4| 360|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 192 bits (469), Expect = 2e-49
Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 2/224 (0%)
Frame = -2
Query: 673 VYLGKDGVVXHAXKGSLXIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATL 494
VY G+ G+ G+L +DSSTID V ++ A + DAP+SGGV GAQ ATL
Sbjct: 74 VYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATL 133
Query: 493 AFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMG 317
FM G G F+R+ +L +MG + G +G+G AK+ NNML+GI +A AE MN+G
Sbjct: 134 TFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLG 193
Query: 316 IKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELAS 137
I MGL+ K L ++N SS R WS++ Y PVPG++ PS R Y GGF LM KDL LA
Sbjct: 194 ISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGFGTTLMAKDLSLAQ 253
Query: 136 GMALGIRSPIPLGAVATQLYRIV-QSRGYGQKDFSFVFQLPERR 8
+ ++P P+G++A Q+YRI+ + Y KDF V+Q +++
Sbjct: 254 NASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQFLKKQ 297
>AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 192 bits (469), Expect = 2e-49
Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 2/224 (0%)
Frame = -2
Query: 673 VYLGKDGVVXHAXKGSLXIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATL 494
VY G+ G+ G+L +DSSTID V ++ A + DAP+SGGV GAQ ATL
Sbjct: 74 VYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATL 133
Query: 493 AFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMG 317
FM G G F+R+ +L +MG + G +G+G AK+ NNML+GI +A AE MN+G
Sbjct: 134 TFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLG 193
Query: 316 IKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELAS 137
I MGL+ K L ++N SS R WS++ Y PVPG++ PS R Y GGF LM KDL LA
Sbjct: 194 ISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGFGTTLMAKDLSLAQ 253
Query: 136 GMALGIRSPIPLGAVATQLYRIV-QSRGYGQKDFSFVFQLPERR 8
+ ++P P+G++A Q+YRI+ + Y KDF V+Q +++
Sbjct: 254 NASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQFLKKQ 297
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +3
Query: 390 CPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 569
C E ICPQ P + GR + +PPA +R P T + P+P S+
Sbjct: 991 CEECICPQ-TAPTPPHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQP 1049
Query: 570 IGKICLGT 593
+ + T
Sbjct: 1050 PRQFAVNT 1057
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 357 PINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPP 482
P N LL+ A+ CP+ NC ITL RD +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 270 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 437
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 270 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 437
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 270 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 437
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 270 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 437
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 270 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 437
LF TSN+ F+ +A + P +P+ + T P P P+ CLAPIT
Sbjct: 658 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 712
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 175 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYG 50
+++L++K++++ +G GI P G + Q + GYG
Sbjct: 459 RDDLLIKNVKIQNGAGSGIDFMTPTGNIELQNIEVKNMGGYG 500
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 526 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 353
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 352 TGMAT 338
AT
Sbjct: 325 PQCAT 329
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 526 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 353
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 352 TGMAT 338
AT
Sbjct: 325 PQCAT 329
>Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical
protein R11D1.1b protein.
Length = 622
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 401 DLSAVELLSSHHFEERKGPFEVF--FTTSGHEGQGSVLSTHD 520
D+ E +H+F R+GP ++F +G E +L HD
Sbjct: 491 DMMDNEADDNHYFRRRRGPLQLFVLLQRAGEEHLARMLEEHD 532
>Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical
protein R11D1.1a protein.
Length = 621
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 401 DLSAVELLSSHHFEERKGPFEVF--FTTSGHEGQGSVLSTHD 520
D+ E +H+F R+GP ++F +G E +L HD
Sbjct: 490 DMMDNEADDNHYFRRRRGPLQLFVLLQRAGEEHLARMLEEHD 531
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/93 (20%), Positives = 44/93 (47%)
Frame = -2
Query: 289 LLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSP 110
L+D +N +S +W+ P +VPT P ++ +D + + V+D R
Sbjct: 2971 LIDFVNTTSRGNWTVSTDAPSELIVPTQPGTK-WDVKIRTQ-TVEDSGKPQASRWSDRVS 3028
Query: 109 IPLGAVATQLYRIVQSRGYGQKDFSFVFQLPER 11
I ++ +++ V+ + G ++ ++LP++
Sbjct: 3029 ITTQSLPGEIFVTVEPK--GPREALVTWELPDK 3059
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/93 (20%), Positives = 44/93 (47%)
Frame = -2
Query: 289 LLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSP 110
L+D +N +S +W+ P +VPT P ++ +D + + V+D R
Sbjct: 2971 LIDFVNTTSRGNWTVSTDAPSELIVPTQPGTK-WDVKIRTQ-TVEDSGKPQASRWSDRVS 3028
Query: 109 IPLGAVATQLYRIVQSRGYGQKDFSFVFQLPER 11
I ++ +++ V+ + G ++ ++LP++
Sbjct: 3029 ITTQSLPGEIFVTVEPK--GPREALVTWELPDK 3059
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/93 (20%), Positives = 44/93 (47%)
Frame = -2
Query: 289 LLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSP 110
L+D +N +S +W+ P +VPT P ++ +D + + V+D R
Sbjct: 2971 LIDFVNTTSRGNWTVSTDAPSELIVPTQPGTK-WDVKIRTQ-TVEDSGKPQASRWSDRVS 3028
Query: 109 IPLGAVATQLYRIVQSRGYGQKDFSFVFQLPER 11
I ++ +++ V+ + G ++ ++LP++
Sbjct: 3029 ITTQSLPGEIFVTVEPK--GPREALVTWELPDK 3059
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/93 (20%), Positives = 44/93 (47%)
Frame = -2
Query: 289 LLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSP 110
L+D +N +S +W+ P +VPT P ++ +D + + V+D R
Sbjct: 2971 LIDFVNTTSRGNWTVSTDAPSELIVPTQPGTK-WDVKIRTQ-TVEDSGKPQASRWSDRVS 3028
Query: 109 IPLGAVATQLYRIVQSRGYGQKDFSFVFQLPER 11
I ++ +++ V+ + G ++ ++LP++
Sbjct: 3029 ITTQSLPGEIFVTVEPK--GPREALVTWELPDK 3059
>AC006610-1|AAK85447.4| 360|Caenorhabditis elegans Hypothetical
protein C30F12.1 protein.
Length = 360
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 459 SKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRAI 572
S SS RP +A +P T T + NP P RA+
Sbjct: 191 SSSSHRPIRQSVSIATSSPATSSSTPSKYNPDPSLRAV 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,698
Number of Sequences: 27780
Number of extensions: 395403
Number of successful extensions: 1068
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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