Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f02
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    27   1.6  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   1.6  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    26   3.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   4.8  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   6.3  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   8.4  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   8.4  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   8.4  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 14  HSIEKTKYR*IKF-PQKSFYIFRNVIFMLFFFVSCLVCV 127
           + I  TKY  + F P+  +  F+N+    F FV+ L C+
Sbjct: 131 NKIRTTKYTPVSFIPKNLWNQFKNIANAFFLFVTLLQCI 169


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 243 RIRANKYWTCVRKPALQQTPKANPV 169
           ++  N +WT   +PA+   P A+PV
Sbjct: 476 KLNGNSWWTVGSQPAVNGAPSADPV 500


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -2

Query: 270 LFSARNRSTRIRANKYWTCVRKPALQQTPKANPVPRSSRWEVSNAMPHTHTRHDTKKKSI 91
           L +A ++   I + +   C++K +LQ    +  + + S++ ++N  PHT    D ++  I
Sbjct: 358 LINAEDKHIAIYSVETRECIKKISLQSKVTSICLSKDSKYALTNLEPHTTFLWDLEENRI 417


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 234 HVSGLTDYGPRKARIRVRDENV 299
           +V+GL DY PR  R    D+NV
Sbjct: 108 YVAGLQDYAPRSMRDNDWDDNV 129


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -3

Query: 281 PDPGFSRPVIGQPGYVPISTGPAYVNRPYNRPQRPTPFP 165
           P+PG     +  P Y+     P  +N P  R     P P
Sbjct: 115 PNPGNGNVGLNNPSYMNSQASPNIMNAPLQRDTSVPPAP 153


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 276 SWLFSARNRSTRIRANKYWTCVRKPALQQTPKANPVPRSSRWEVSNAMPHTHT 118
           S L   R  S R+R+N+    V +P + QTP  N       W   + + H ++
Sbjct: 248 SELLRRRIESARLRSNQLNEPVEQPRVVQTPVTN-ASEQQAWNDFDEILHANS 299


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 79  PKNIKTLLWKFYLSIFCFFYRMFVT 5
           P   K +LW  ++ +   F RMF+T
Sbjct: 185 PNAFKNVLWNSFILLILGFARMFLT 209


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 70  YFSERNFYAFFLCIMSCVCVW 132
           Y S R  Y   + +++CVC+W
Sbjct: 160 YVSRRVVYCKHIQLVACVCLW 180


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 314 NNHPGHVLISNPDPGFSRPVIGQPGYVPISTGPAYVNRP 198
           N  PG+ + SN  P    P +  PG   +S  P+  + P
Sbjct: 198 NVRPGYGMPSNQKPPNFAPGMPAPGPTAVSASPSLQSMP 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,336
Number of Sequences: 5004
Number of extensions: 36104
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)