Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14f02
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U87223-1|AAB48481.1| 1384|Homo sapiens contactin associated prot... 37 0.034
BC021908-1|AAH21908.1| 485|Homo sapiens zinc finger, DHHC-type ... 31 2.2
U11700-1|AAA92667.1| 1465|Homo sapiens copper transporting ATPas... 31 2.9
U03464-1|AAB52902.1| 1465|Homo sapiens ATP7B protein. 31 2.9
DQ015922-1|AAY41166.1| 1354|Homo sapiens Wilson's disease protei... 31 2.9
BC117200-1|AAI17201.1| 1035|Homo sapiens ATP7B protein protein. 31 2.9
AL162377-2|CAI13428.1| 1465|Homo sapiens ATP7B protein. 31 2.9
AL139082-1|CAI12888.1| 1465|Homo sapiens ATP7B protein. 31 2.9
AL138821-2|CAI13743.1| 1465|Homo sapiens ATP7B protein. 31 2.9
AF034187-1|AAD50529.1| 122|Homo sapiens Ndr Ser/Thr kinase-like... 31 2.9
BX537775-1|CAD97836.1| 180|Homo sapiens hypothetical protein pr... 29 9.0
AK000826-1|BAA91390.1| 231|Homo sapiens protein ( Homo sapiens ... 29 9.0
>U87223-1|AAB48481.1| 1384|Homo sapiens contactin associated protein
protein.
Length = 1384
Score = 37.1 bits (82), Expect = 0.034
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -3
Query: 293 LISNPDPGFSR---PVIGQPGYVPISTGPAYVNRPYNRPQRPTPFPGARG 153
++S P PG+ P PGYVP GP Y Y RP RP PG RG
Sbjct: 1027 MLSRPVPGYEPGYIPGYDTPGYVPGYHGPGYRLPDYPRPGRPV--PGYRG 1074
>BC021908-1|AAH21908.1| 485|Homo sapiens zinc finger, DHHC-type
containing 1 protein.
Length = 485
Score = 31.1 bits (67), Expect = 2.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 233 PISTGPAYVNRPYNRPQRPTPFPGAR 156
P GPA VN ++RP P P PG R
Sbjct: 326 PGQAGPAAVNAKHSRPASPDPTPGRR 351
>U11700-1|AAA92667.1| 1465|Homo sapiens copper transporting ATPase
protein.
Length = 1465
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 50 FPQKSFYIFRNVIFMLFFF-----VSCLVCVCGIALLTSHRELRGTGLAF--GVCCRAGL 208
FP + +I + + + F F V C+ C C + L T + GTG+A G+ + G
Sbjct: 954 FPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGK 1013
Query: 209 RTQVQYLLARIRVDR 253
++ + + + D+
Sbjct: 1014 PLEMAHKIKTVMFDK 1028
>U03464-1|AAB52902.1| 1465|Homo sapiens ATP7B protein.
Length = 1465
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 50 FPQKSFYIFRNVIFMLFFF-----VSCLVCVCGIALLTSHRELRGTGLAF--GVCCRAGL 208
FP + +I + + + F F V C+ C C + L T + GTG+A G+ + G
Sbjct: 954 FPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGK 1013
Query: 209 RTQVQYLLARIRVDR 253
++ + + + D+
Sbjct: 1014 PLEMAHKIKTVMFDK 1028
>DQ015922-1|AAY41166.1| 1354|Homo sapiens Wilson's disease protein
protein.
Length = 1354
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 50 FPQKSFYIFRNVIFMLFFF-----VSCLVCVCGIALLTSHRELRGTGLAF--GVCCRAGL 208
FP + +I + + + F F V C+ C C + L T + GTG+A G+ + G
Sbjct: 843 FPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGK 902
Query: 209 RTQVQYLLARIRVDR 253
++ + + + D+
Sbjct: 903 PLEMAHKIKTVMFDK 917
>BC117200-1|AAI17201.1| 1035|Homo sapiens ATP7B protein protein.
Length = 1035
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 50 FPQKSFYIFRNVIFMLFFF-----VSCLVCVCGIALLTSHRELRGTGLAF--GVCCRAGL 208
FP + +I + + + F F V C+ C C + L T + GTG+A G+ + G
Sbjct: 524 FPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGK 583
Query: 209 RTQVQYLLARIRVDR 253
++ + + + D+
Sbjct: 584 PLEMAHKIKTVMFDK 598
>AL162377-2|CAI13428.1| 1465|Homo sapiens ATP7B protein.
Length = 1465
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 50 FPQKSFYIFRNVIFMLFFF-----VSCLVCVCGIALLTSHRELRGTGLAF--GVCCRAGL 208
FP + +I + + + F F V C+ C C + L T + GTG+A G+ + G
Sbjct: 954 FPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGK 1013
Query: 209 RTQVQYLLARIRVDR 253
++ + + + D+
Sbjct: 1014 PLEMAHKIKTVMFDK 1028
>AL139082-1|CAI12888.1| 1465|Homo sapiens ATP7B protein.
Length = 1465
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 50 FPQKSFYIFRNVIFMLFFF-----VSCLVCVCGIALLTSHRELRGTGLAF--GVCCRAGL 208
FP + +I + + + F F V C+ C C + L T + GTG+A G+ + G
Sbjct: 954 FPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGK 1013
Query: 209 RTQVQYLLARIRVDR 253
++ + + + D+
Sbjct: 1014 PLEMAHKIKTVMFDK 1028
>AL138821-2|CAI13743.1| 1465|Homo sapiens ATP7B protein.
Length = 1465
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 50 FPQKSFYIFRNVIFMLFFF-----VSCLVCVCGIALLTSHRELRGTGLAF--GVCCRAGL 208
FP + +I + + + F F V C+ C C + L T + GTG+A G+ + G
Sbjct: 954 FPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGK 1013
Query: 209 RTQVQYLLARIRVDR 253
++ + + + D+
Sbjct: 1014 PLEMAHKIKTVMFDK 1028
>AF034187-1|AAD50529.1| 122|Homo sapiens Ndr Ser/Thr kinase-like
protein protein.
Length = 122
Score = 30.7 bits (66), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +1
Query: 85 NFYAFFLCIMSCVCV---WHCVAYFP 153
N+Y+ C+ CVCV W C++ FP
Sbjct: 12 NWYSLVCCVCVCVCVCVWWLCISLFP 37
>BX537775-1|CAD97836.1| 180|Homo sapiens hypothetical protein
protein.
Length = 180
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 192 QTPKANPVPRSSRWEVSNAMPHTHTRHDTKKKSIKI 85
Q PK NP+ S +S+ HTHT H + IK+
Sbjct: 92 QLPKENPIKHSYTPHISHTHTHTHT-HTHRSDVIKL 126
>AK000826-1|BAA91390.1| 231|Homo sapiens protein ( Homo sapiens
cDNA FLJ20819 fis, clone ADSE00511. ).
Length = 231
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 192 QTPKANPVPRSSRWEVSNAMPHTHTRHDTKKKSIKI 85
Q PK NP+ S +S+ HTHT H + IK+
Sbjct: 143 QLPKENPIKHSYTPHISHTHTHTHT-HTHRSDVIKL 177
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,116,707
Number of Sequences: 237096
Number of extensions: 1509452
Number of successful extensions: 3929
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3913
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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