Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f02
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U41746-8|AAO25991.1|  430|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF067936-6|AAC19214.1|  348|Caenorhabditis elegans Ground-like (...    27   10.0 
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical
           protein F08B12.1 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
 Frame = +2

Query: 17  SIEKTKYR*IKFPQKSFYIFR------NVIFMLF-FFVSCLVCVCGIALLTSHRELRGTG 175
           S+EK  ++ I+F QK + +        +V+F++F FF  C VC+C  +    + + R  G
Sbjct: 88  SVEKKYWQWIEF-QKGWIVLSVGLVAISVLFVVFYFFYKCCVCICSRSSKKQNTDARYDG 146

Query: 176 LAFGVC 193
               +C
Sbjct: 147 CKRSMC 152


>U41746-8|AAO25991.1|  430|Caenorhabditis elegans Hypothetical
           protein T18H9.7c protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 177 NPVPRSSRWEVSNAMP--HTHTRHDTKKKSIKITFR 76
           NPVP+SS++   +  P   ++T  ++KK + K+T +
Sbjct: 285 NPVPQSSQYSYGSDFPPSSSNTTPNSKKDTAKVTIK 320


>U41746-7|AAK71873.1|  803|Caenorhabditis elegans Hypothetical
           protein T18H9.7a protein.
          Length = 803

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 177 NPVPRSSRWEVSNAMP--HTHTRHDTKKKSIKITFR 76
           NPVP+SS++   +  P   ++T  ++KK + K+T +
Sbjct: 658 NPVPQSSQYSYGSDFPPSSSNTTPNSKKDTAKVTIK 693


>AF067936-6|AAC19214.1|  348|Caenorhabditis elegans Ground-like (grd
           related) protein 1 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 284 NPDPGFSRPVIGQP-GYVPISTGPAYVNRPYNRPQRPTPFP 165
           +P+   +RP+  +P  Y+P+   PA   + +  PQRP P P
Sbjct: 158 SPEAFITRPLPYRPVPYMPVQL-PAACQQYFLPPQRPQPMP 197


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 65  FYIFRNVIFMLFFFVSCLVCVCGIALLTSHRELR 166
           F++ +    ++FFF+SC + +  + L+    EL+
Sbjct: 95  FFVEKCAYLLIFFFISCTMFLYAVYLVKHETELK 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,748,917
Number of Sequences: 27780
Number of extensions: 222590
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)