Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14f01
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039042-2|AAP40512.1|  366|Caenorhabditis elegans Serpentine re...    26   1.4  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    30   1.9  
U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U13070-10|AAC46644.3|  294|Caenorhabditis elegans Hypothetical p...    28   5.7  
U13070-9|AAU05578.1|  388|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U13070-8|AAN84828.1|  433|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AB079783-1|BAB84821.1|  433|Caenorhabditis elegans endo-beta-N-a...    28   5.7  

>AF039042-2|AAP40512.1|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein102 protein.
          Length = 366

 Score = 26.2 bits (55), Expect(2) = 1.4
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 424 RILLNFKSTAVNTWEKDIQKKWHGILENKLHIKFPLNRKAFEI-LQIIYLTYKYCDKKII 600
           RIL + K T +   +  +       L  KL +         E  L +IY+     DK ++
Sbjct: 239 RILQSIKITNLTRRKSSVHHDEKRDLSTKLIVVMTFTFVLIETPLGMIYMGRVIFDKNLM 298

Query: 601 F*TLSTTIVSYFLIRSTV 654
              LST +  YFL+  T+
Sbjct: 299 ITLLSTDLAVYFLMLVTI 316



 Score = 22.6 bits (46), Expect(2) = 1.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 232 ILM*VLINKF*RSLKFIIFVIFLTNVFKKVLI 327
           ++M VLI++F   + FII  I L  + + + I
Sbjct: 215 MIMDVLISRFIPCVAFIILTIALLRILQSIKI 246


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 553 LQIIYLTYKYCDKKIIF*TLSTTIVSYFLIRSTV--VLNFIACNL 681
           L IIYLT  + DK      LST +  YFL+  T+  +L+ I C L
Sbjct: 278 LGIIYLTKAFFDKSEAVVILSTDLALYFLVLVTINAILHPIFCIL 322


>U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical
           protein C06G3.4 protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +1

Query: 436 NFKSTAVNTWEKDIQKKWHGILENKLHIKFPLNRKAFEILQIIYLTY 576
           NF      TWE + +KK +  +E   H+ + +  + F+ +  I + +
Sbjct: 187 NFNGNFWKTWESEGKKKLNETIEKMKHLNYLMGNQNFDDISSIAIVF 233


>U13070-10|AAC46644.3|  294|Caenorhabditis elegans Hypothetical
           protein F01F1.10a protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +1

Query: 433 LNFKSTAVNTWEKDIQKKWH-GILEN-KLHIKFPLN---RKAFEILQIIYLTYKYCDKKI 597
           L  KS  +N   K I   W+  +L+N KLH +  LN   RK ++    IYL Y + DK++
Sbjct: 172 LTEKSKKMNENSKVI---WYDSVLDNGKLHWQNELNEMNRKFYDACDAIYLNYNWKDKEL 228

Query: 598 I 600
           +
Sbjct: 229 L 229


>U13070-9|AAU05578.1|  388|Caenorhabditis elegans Hypothetical
           protein F01F1.10c protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +1

Query: 433 LNFKSTAVNTWEKDIQKKWH-GILEN-KLHIKFPLN---RKAFEILQIIYLTYKYCDKKI 597
           L  KS  +N   K I   W+  +L+N KLH +  LN   RK ++    IYL Y + DK++
Sbjct: 127 LTEKSKKMNENSKVI---WYDSVLDNGKLHWQNELNEMNRKFYDACDAIYLNYNWKDKEL 183

Query: 598 I 600
           +
Sbjct: 184 L 184


>U13070-8|AAN84828.1|  433|Caenorhabditis elegans Hypothetical
           protein F01F1.10b protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +1

Query: 433 LNFKSTAVNTWEKDIQKKWH-GILEN-KLHIKFPLN---RKAFEILQIIYLTYKYCDKKI 597
           L  KS  +N   K I   W+  +L+N KLH +  LN   RK ++    IYL Y + DK++
Sbjct: 172 LTEKSKKMNENSKVI---WYDSVLDNGKLHWQNELNEMNRKFYDACDAIYLNYNWKDKEL 228

Query: 598 I 600
           +
Sbjct: 229 L 229


>AB079783-1|BAB84821.1|  433|Caenorhabditis elegans
           endo-beta-N-acetylglucosaminidase protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +1

Query: 433 LNFKSTAVNTWEKDIQKKWH-GILEN-KLHIKFPLN---RKAFEILQIIYLTYKYCDKKI 597
           L  KS  +N   K I   W+  +L+N KLH +  LN   RK ++    IYL Y + DK++
Sbjct: 172 LTEKSKKMNENSKVI---WYDSVLDNGKLHWQNELNEMNRKFYDACDAIYLNYNWKDKEL 228

Query: 598 I 600
           +
Sbjct: 229 L 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,913,027
Number of Sequences: 27780
Number of extensions: 298151
Number of successful extensions: 650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)