Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e22
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   2.1  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   2.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   4.9  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    26   4.9  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   8.6  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 373 LEVHQMSLERVLVAIETCSHKLSL--LLPSWQLQADYGLQMILHSF 504
           +  H++S+++   A++  S K+    +L +W+L    G+  IL+SF
Sbjct: 416 IAAHRISVKKAAAALKASSVKIQGRDILATWKLLVALGMTPILYSF 461


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 194 YFSISHLLLIFSRHFNDSRFINNAGCAVTLLHNTNDPSLI 313
           Y   SHLL   S  FN  +F  +  C     +  NDP ++
Sbjct: 263 YSKESHLLQHGSHSFNGKQFETSFNCLTPSENTVNDPQVL 302


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 471 CL*LPRWQQ*RKLVGTCFNCYKDTL-QRHLVDF*SVCHENRLLRTVKILRNKKDIRL 304
           CL L  +++   +V   ++C++D + Q  LV+F SVC     +  + +  N+  + L
Sbjct: 210 CLQLQMFRKMHNIVRP-WDCFQDDIPQTWLVEFSSVCQAAESISLIAVNNNRPPVEL 265


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  ISDNGQVLQQKKKEVIYCF-NINKIIYFAVK 148
           +SD  Q +   KK+ I+C  N+  ++YF +K
Sbjct: 166 LSDRQQNINPSKKDAIFCIANLLCLLYFRLK 196


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 47  VKISISDNGQVLQQKKKEVIYCFNINKIIYFAVKIK 154
           V++ IS NG+    + K+ I C N+ K     +++K
Sbjct: 477 VRLRISRNGEERLMEPKDEIQCLNLPKSALGTIQVK 512


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 2   VISLTKLTPVT*IMRVKISISDNGQVLQQKKKEVIYCFNINKIIYFAVKIK 154
           +I  TKL     + + ++ +  N +  +Q  K+VI   + N IIY  ++IK
Sbjct: 528 LILSTKLLDFEPLAKHQVMLLLNMEAYEQALKKVIETMDNNLIIYVVLQIK 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,357
Number of Sequences: 5004
Number of extensions: 48134
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)