Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e22
         (605 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U91994-1|AAB88790.1|  398|Drosophila melanogaster selenophosphat...   257   1e-68
AY095058-1|AAM11386.1|  398|Drosophila melanogaster LD46437p pro...   257   1e-68
AJ000672-1|CAA04229.1|  398|Drosophila melanogaster SelD protein...   257   1e-68
AE013599-1864|AAM70998.1|  398|Drosophila melanogaster CG8553-PB...   257   1e-68
AE013599-1863|AAF58266.1|  398|Drosophila melanogaster CG8553-PA...   257   1e-68
AJ278068-1|CAB93526.2|  370|Drosophila melanogaster selenophosph...   105   6e-23
AE014134-1845|AAF52918.2|  370|Drosophila melanogaster CG5025-PA...   105   6e-23
BT011485-1|AAR99143.1|  250|Drosophila melanogaster LD21093p pro...    57   2e-08
AE014134-1846|AAN10746.2|  305|Drosophila melanogaster CG5025-PB...    57   2e-08
AF279253-1|AAF80118.1|  305|Drosophila melanogaster selenophosph...    55   7e-08
M37610-1|AAA28826.1|  152|Drosophila melanogaster protein ( D.me...    29   3.7  
AY113505-1|AAM29510.1|  269|Drosophila melanogaster RE58962p pro...    28   8.6  
AE014296-3615|AAF51778.1|  269|Drosophila melanogaster CG14565-P...    28   8.6  

>U91994-1|AAB88790.1|  398|Drosophila melanogaster selenophosphate
           synthetase protein.
          Length = 398

 Score =  257 bits (629), Expect = 1e-68
 Identities = 118/128 (92%), Positives = 125/128 (97%)
 Frame = -2

Query: 604 RIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGN 425
           R+AARLMHKYNAHG+TD+TGFGLLGHAQ LA+HQK +VSFVIHNLPVIAKMAAVAKACGN
Sbjct: 271 RVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGN 330

Query: 424 MFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPR 245
           MFQLLQGH+ ETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN+TARIIDKPR
Sbjct: 331 MFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPR 390

Query: 244 VIEVPAKD 221
           VIEVPAKD
Sbjct: 391 VIEVPAKD 398


>AY095058-1|AAM11386.1|  398|Drosophila melanogaster LD46437p
           protein.
          Length = 398

 Score =  257 bits (629), Expect = 1e-68
 Identities = 118/128 (92%), Positives = 125/128 (97%)
 Frame = -2

Query: 604 RIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGN 425
           R+AARLMHKYNAHG+TD+TGFGLLGHAQ LA+HQK +VSFVIHNLPVIAKMAAVAKACGN
Sbjct: 271 RVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGN 330

Query: 424 MFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPR 245
           MFQLLQGH+ ETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN+TARIIDKPR
Sbjct: 331 MFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPR 390

Query: 244 VIEVPAKD 221
           VIEVPAKD
Sbjct: 391 VIEVPAKD 398


>AJ000672-1|CAA04229.1|  398|Drosophila melanogaster SelD protein
           protein.
          Length = 398

 Score =  257 bits (629), Expect = 1e-68
 Identities = 118/128 (92%), Positives = 125/128 (97%)
 Frame = -2

Query: 604 RIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGN 425
           R+AARLMHKYNAHG+TD+TGFGLLGHAQ LA+HQK +VSFVIHNLPVIAKMAAVAKACGN
Sbjct: 271 RVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGN 330

Query: 424 MFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPR 245
           MFQLLQGH+ ETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN+TARIIDKPR
Sbjct: 331 MFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPR 390

Query: 244 VIEVPAKD 221
           VIEVPAKD
Sbjct: 391 VIEVPAKD 398


>AE013599-1864|AAM70998.1|  398|Drosophila melanogaster CG8553-PB,
           isoform B protein.
          Length = 398

 Score =  257 bits (629), Expect = 1e-68
 Identities = 118/128 (92%), Positives = 125/128 (97%)
 Frame = -2

Query: 604 RIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGN 425
           R+AARLMHKYNAHG+TD+TGFGLLGHAQ LA+HQK +VSFVIHNLPVIAKMAAVAKACGN
Sbjct: 271 RVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGN 330

Query: 424 MFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPR 245
           MFQLLQGH+ ETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN+TARIIDKPR
Sbjct: 331 MFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPR 390

Query: 244 VIEVPAKD 221
           VIEVPAKD
Sbjct: 391 VIEVPAKD 398


>AE013599-1863|AAF58266.1|  398|Drosophila melanogaster CG8553-PA,
           isoform A protein.
          Length = 398

 Score =  257 bits (629), Expect = 1e-68
 Identities = 118/128 (92%), Positives = 125/128 (97%)
 Frame = -2

Query: 604 RIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGN 425
           R+AARLMHKYNAHG+TD+TGFGLLGHAQ LA+HQK +VSFVIHNLPVIAKMAAVAKACGN
Sbjct: 271 RVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGN 330

Query: 424 MFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNRTARIIDKPR 245
           MFQLLQGH+ ETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGN+TARIIDKPR
Sbjct: 331 MFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIVEKGNKTARIIDKPR 390

Query: 244 VIEVPAKD 221
           VIEVPAKD
Sbjct: 391 VIEVPAKD 398


>AJ278068-1|CAB93526.2|  370|Drosophila melanogaster selenophosphate
           synthetase 2 protein.
          Length = 370

 Score =  105 bits (251), Expect = 6e-23
 Identities = 54/116 (46%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
 Frame = -2

Query: 598 AARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMF 419
           AA LMHKY AH +TD+TGFGLLGHA NLA  QK +V F I+ LP+I  +   +   G   
Sbjct: 244 AALLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLVGQST 303

Query: 418 QLLQGHAPETSGGLLICLPREQAAAYCKDIEK-QEGYQ-AWIIGIVEKGNRTARII 257
           +   G + ETSGGLLICLP + A  +C+D E+   G Q ++ IG V   N +  ++
Sbjct: 304 KFRSGRSVETSGGLLICLPADAADKFCRDFEEATNGEQKSFQIGHVTAANESDAVL 359


>AE014134-1845|AAF52918.2|  370|Drosophila melanogaster CG5025-PA,
           isoform A protein.
          Length = 370

 Score =  105 bits (251), Expect = 6e-23
 Identities = 54/116 (46%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
 Frame = -2

Query: 598 AARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMF 419
           AA LMHKY AH +TD+TGFGLLGHA NLA  QK +V F I+ LP+I  +   +   G   
Sbjct: 244 AALLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLVGQST 303

Query: 418 QLLQGHAPETSGGLLICLPREQAAAYCKDIEK-QEGYQ-AWIIGIVEKGNRTARII 257
           +   G + ETSGGLLICLP + A  +C+D E+   G Q ++ IG V   N +  ++
Sbjct: 304 KFRSGRSVETSGGLLICLPADAADKFCRDFEEATNGEQKSFQIGHVTAANESDAVL 359


>BT011485-1|AAR99143.1|  250|Drosophila melanogaster LD21093p
           protein.
          Length = 250

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = -2

Query: 598 AARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNE 494
           AA LMHKY AH +TD+TGFGLLGHA NLA  QK +
Sbjct: 189 AALLMHKYQAHCATDITGFGLLGHANNLAQFQKEK 223


>AE014134-1846|AAN10746.2|  305|Drosophila melanogaster CG5025-PB,
           isoform B protein.
          Length = 305

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = -2

Query: 598 AARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNE 494
           AA LMHKY AH +TD+TGFGLLGHA NLA  QK +
Sbjct: 244 AALLMHKYQAHCATDITGFGLLGHANNLAQFQKEK 278


>AF279253-1|AAF80118.1|  305|Drosophila melanogaster selenophosphate
           synthetase 2-likeprotein protein.
          Length = 305

 Score = 55.2 bits (127), Expect = 7e-08
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = -2

Query: 598 AARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNE 494
           A  LMHKY AH +TD+TGFGLLGHA NLA  QK +
Sbjct: 244 AXLLMHKYQAHCATDITGFGLLGHANNLAQFQKEK 278


>M37610-1|AAA28826.1|  152|Drosophila melanogaster protein (
           D.melanogaster polytenegene, partial cds. ).
          Length = 152

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 455 DGSSSESLWEHVSIATRTRSRDIWWTSNLSATRTGC 348
           DG S +SL E +   T T      WT +    RTGC
Sbjct: 79  DGLSGQSLHEDLHTTTETXEPSEGWTPSGCCNRTGC 114


>AY113505-1|AAM29510.1|  269|Drosophila melanogaster RE58962p
           protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 397 ERVLVAIETCSHKLSLLLPSW-QLQADYGLQMILHSFDEMPSSVHDPVNQNQLHLL 561
           E   V ++     L + L S+  + +D  LQ ++HS + +P+S  DP+  N +H L
Sbjct: 213 EAEYVLVDGGHDDLDVQLASFTHIGSDAHLQPVVHSVEIVPTSFDDPLIVNYVHNL 268


>AE014296-3615|AAF51778.1|  269|Drosophila melanogaster CG14565-PA
           protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 397 ERVLVAIETCSHKLSLLLPSW-QLQADYGLQMILHSFDEMPSSVHDPVNQNQLHLL 561
           E   V ++     L + L S+  + +D  LQ ++HS + +P+S  DP+  N +H L
Sbjct: 213 EAEYVLVDGGHDDLDVQLASFTHIGSDAHLQPVVHSVEIVPTSFDDPLIVNYVHNL 268


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,375,107
Number of Sequences: 53049
Number of extensions: 512819
Number of successful extensions: 1262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)