Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e22
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical ...   110   7e-25
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical
           protein Y45F10A.4 protein.
          Length = 378

 Score =  110 bits (265), Expect = 7e-25
 Identities = 62/133 (46%), Positives = 79/133 (59%), Gaps = 7/133 (5%)
 Frame = -2

Query: 604 RIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPVIAKMAAVAKAC-- 431
           R AA+L+HKY+AH STDVTGFGLLGHA+NLA  QK  + F+I  LP+I  M  +A     
Sbjct: 244 RNAAKLLHKYDAHSSTDVTGFGLLGHAENLARVQKQPMEFIIEKLPIIEYMDEIADKMIA 303

Query: 430 --GNMFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQEGYQAWIIGIV---EKGNRTA 266
             G  F+L QG + ETSGGLLI +  E A  Y  ++   +   AWIIG V      +  A
Sbjct: 304 KGGEGFKLYQGTSAETSGGLLIAMSEENAKKYIAELSSLDNAPAWIIGKVTAKTTDSSIA 363

Query: 265 RIIDKPRVIEVPA 227
           RI+     I VP+
Sbjct: 364 RILPDAVRISVPS 376


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 24/81 (29%), Positives = 38/81 (46%)
 Frame = -1

Query: 596 SKIDAQVQCSRLNRCNWFWFTGSCTELGISSKE*SIICNP*SACNCQDGSSSESLWEHVS 417
           S   A    SR +R    W   S T L  SS   S++ +P ++ +  + SSSE+    +S
Sbjct: 448 SSFSANYYSSRFSR----WKHNSETGLNPSS---SLLVDPFASGDFHEASSSEASSTPLS 500

Query: 416 IATRTRSRDIWWTSNLSATRT 354
            A RT+S +  W   L   ++
Sbjct: 501 PARRTKSEEAIWKPVLHTVKS 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,344,046
Number of Sequences: 27780
Number of extensions: 271924
Number of successful extensions: 741
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)