Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e18
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1022 + 7992901-7994676                                           28   5.6  
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675...    27   9.9  

>06_01_1022 + 7992901-7994676
          Length = 591

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 387 SVLYGRI---MRSNYFPLNFVDFNCCFIFNIHFVLCFYL 280
           S L+ R+   +R NY     +   C  +F +HF  C YL
Sbjct: 151 SKLFARVEKDIRFNYLWTRLIKLLCVTLFALHFAACIYL 189


>05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,
            6759967-6760077,6760562-6760663,6761139-6761366,
            6761568-6761696,6761753-6761869,6761955-6762301,
            6762377-6762931,6763104-6763182,6763429-6763595,
            6763857-6764075,6764956-6765139,6765175-6765371,
            6765717-6766035,6766379-6766538,6767642-6767794,
            6767911-6768013
          Length = 1226

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 467  SAMKLTKHYESSQETKISNYSRNI 538
            +AM + KH ES   T  SNYS  I
Sbjct: 1069 NAMNIEKHQESPDSTNTSNYSPEI 1092


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,947
Number of Sequences: 37544
Number of extensions: 228879
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)