Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14e18
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF100657-5|AAC68960.1|  451|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = -3

Query: 354 YFPLNFVDFNCCFIFNIHFVLCFYL*K*YVYLNRIFYINETKFPALRFLIKE*NFRFKFT 175
           Y P + + ++  F+  + F +   +   Y Y++ + +  E  FP ++F  K   F + F 
Sbjct: 9   YIP-DLLSYSSGFLLEVFFFISCLIIPFYFYVHNLNWHKEKDFPIVQFFYKMVLFSY-FL 66

Query: 174 FKSIVLSAIRIKII 133
           F + +L  I + +I
Sbjct: 67  FSTFILYFIVLYLI 80


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 626 FKRVSCKNNFMEILKRLNKLKNQTSKPCNKYCDYNLKSSSLGNFRS 489
           FK VS  N   + LK  +  KN   +PC+     +LKSS +GN R+
Sbjct: 483 FKCVSSSNQTEKDLKSFSIKKNVQVQPCSP----SLKSSDIGNERN 524


>AF100657-5|AAC68960.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C12.1 protein.
          Length = 451

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 43  MCTQRSNAKRRRFKIPSDRVSFFFDTKIIV 132
           MC  RSNAKRR   +P  +    +D K+ +
Sbjct: 340 MCKWRSNAKRRTNAVPHCKTYVKYDKKVAI 369


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 584 KRLNKLKNQTSKPCNKYCDYNLKSSSLGN 498
           K L K++N  S P +KYCD  LKS S  N
Sbjct: 172 KELQKVRN--SLPASKYCDQVLKSISSCN 198


>Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical
           protein F28H7.9 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 531 RL*FEIFVSWELS*CFVNFIADFLTKCILLI*NMRLHSNMNILLLL 394
           RL  +   S+E+     NF+ +++    LL+    +HSN++ILLLL
Sbjct: 24  RLPLQFIYSFEVGMMVTNFL-EYVYTFYLLLRFRAMHSNLHILLLL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,289
Number of Sequences: 27780
Number of extensions: 266138
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)