Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e14
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 176 1e-45
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 95 8e-21
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 90 2e-19
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 82 4e-17
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 79 4e-16
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 72 5e-14
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 60 2e-10
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 29 0.58
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 7.1
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 7.1
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 7.1
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 25 9.4
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 176 bits (429), Expect = 1e-45
Identities = 83/159 (52%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GL ADARILI++A++E Q+HKL + DPV++EY+TRY+AG++QKYTQS G RPFG+S LI
Sbjct: 76 GLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIA 135
Query: 352 GFDY-DGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIR 176
GFD D +P ++QTEP+GIY WKA A GR++K RE+LEKN+ E + + + LA+
Sbjct: 136 GFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNW--KEGLSRDETIHLAVS 193
Query: 175 ALLEVVQSGQKNLEIAVMRRGQPMQMLDLDTINSYVSVI 59
+LLEVVQ+ N+E+A+M G+ ++ L D I++ V I
Sbjct: 194 SLLEVVQTASGNIELAIMDPGKDVEFLHSDKIDTIVKEI 232
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 94.7 bits (225), Expect = 8e-21
Identities = 57/141 (40%), Positives = 86/141 (60%), Gaps = 4/141 (2%)
Frame = -3
Query: 532 GLTADARILINRAQIECQS--HKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCL 359
G+ D R+L+++++ Q+ K+ E P T + + + IA + Q+ TQS G RPFG+S L
Sbjct: 77 GMGPDFRVLVDKSRKVAQTTYKKIYNEYPPT-KILVQEIASVMQESTQSGGVRPFGVSLL 135
Query: 358 IGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAI 179
+ G D G P L+Q +PSG Y+ WKA A G+S+ + FLEK Y DE+ ++ AV AI
Sbjct: 136 VAGMDEKG-PSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYN-DELELDD-AVHTAI 192
Query: 178 RALLEVVQS--GQKNLEIAVM 122
AL E + + N+EIAV+
Sbjct: 193 LALKETFEGELTEDNIEIAVV 213
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 89.8 bits (213), Expect = 2e-19
Identities = 49/127 (38%), Positives = 72/127 (56%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GLTADA ILIN A+ Q + T + + E + R + LKQ YTQ G RPFG+S L
Sbjct: 78 GLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYA 137
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D+ LFQ+ PSG Y W+AN+ G ++ +V+ + + Y D E A +A++
Sbjct: 138 GWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASA--MAVKF 195
Query: 172 LLEVVQS 152
L + + S
Sbjct: 196 LSKTLDS 202
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 82.2 bits (194), Expect = 4e-17
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 8/143 (5%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG------RRPFG 371
GLTADAR +I A+++ Q+H+ T ++P +E T+ I L ++ + RPFG
Sbjct: 80 GLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFG 139
Query: 370 ISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAV 191
++ LI G D G P L+ +EPSG Y+ ++A A G ++ + L K + D E A
Sbjct: 140 VALLIAGIDEHG-PQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEE--AE 196
Query: 190 KLAIRALLEVVQS--GQKNLEIA 128
L ++ L +V++ KN+++A
Sbjct: 197 VLILKVLRQVMEEKLDSKNVQLA 219
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 79.0 bits (186), Expect = 4e-16
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 4/151 (2%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GL DAR+L N + E S K P+ + + +A Q TQ GRRP+G+ L+
Sbjct: 76 GLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVI 135
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D G PHL + +PSG+ E+ + G +++ R ++E+N ++ + A+RA
Sbjct: 136 GYDESG-PHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRA 194
Query: 172 LLEVVQSGQ----KNLEIAVMRRGQPMQMLD 92
L + + Q +N+ I+V+ + + + D
Sbjct: 195 LRDTLSKDQELTEENVSISVIGKDEKYTLYD 225
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 72.1 bits (169), Expect = 5e-14
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G ADAR ++RA+ E + P+ + + + +A + Q TQ RP G++ +
Sbjct: 80 GSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLV 139
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATE-NGAVKLAIR 176
D + P LF+ +P+G Y +KA + G +LEK + D + + V+ I+
Sbjct: 140 AVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQ 199
Query: 175 ALLEVVQSGQKN--LEIAVMRRGQPMQMLDLDTINSYVSVI 59
AL+ + + K+ L+I V+ +P ++L ++ I +++ I
Sbjct: 200 ALMSSLSTDFKSTELQIGVVEDDKPFRVLSVEEIEAHLQSI 240
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 60.1 bits (139), Expect = 2e-10
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G D + ++ RA+ E S + P+ I + Q +T + RPFG+ +
Sbjct: 79 GFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVA 138
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEK-NYTADEVATENGAVKLAIR 176
+D +G PHL+ EP+G+Y+ + A G+ + R LEK N+++ ++ AVK A R
Sbjct: 139 TYDSEG-PHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKM---KDAVKEAAR 194
Query: 175 AL 170
L
Sbjct: 195 IL 196
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 28.7 bits (61), Expect = 0.58
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -3
Query: 379 PFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLE 236
P+ + + G D +G ++ +P G Y A G +A + FL+
Sbjct: 107 PYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLD 154
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 338 IIVESSYQTRNTKWSTTIALSIFLFETCYVSCNILQCYWILD 463
II S Y+T N W++TI ++CN+LQ + +D
Sbjct: 549 IIYPSLYKTANEHWNSTIQA---------IACNVLQIFVDMD 581
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 7.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 401 IFLFETCYVSCNILQC 448
I LF+TCY+ C + C
Sbjct: 567 IVLFDTCYMVCTYIVC 582
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 334 SPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTA 221
SP LF I + NAT S +V FL+K T+
Sbjct: 247 SPKLFSPSKQAIMGTRQPNATSGSPLSVTPFLQKTSTS 284
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 365 RNTKWSTTIALSIFLFETCYVSCNILQ 445
RNTKWS T +FL +C +++
Sbjct: 36 RNTKWSWTHLQYVFLAGNLIFACIVIE 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,843
Number of Sequences: 5004
Number of extensions: 41566
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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