Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14e14
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 200 6e-52
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 198 2e-51
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 104 5e-23
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 104 5e-23
06_01_0539 + 3869156-3869908 92 3e-19
06_01_0529 + 3831100-3831852 92 3e-19
06_01_0479 + 3419657-3420337 92 3e-19
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 79 3e-15
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 77 1e-14
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 69 3e-12
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 66 1e-11
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 62 2e-10
07_03_1256 - 25237465-25237590,25237833-25237918,25238025-252380... 50 2e-06
11_04_0445 + 17818190-17818874,17819730-17819749 31 0.58
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 30 1.3
02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710... 28 5.4
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415... 27 7.2
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 200 bits (488), Expect = 6e-52
Identities = 102/159 (64%), Positives = 124/159 (77%), Gaps = 1/159 (0%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GL ADAR+LINRA++ECQSH+LTVEDPVT+EYITRYIAGL+QKYTQS G RPFG+S LI
Sbjct: 146 GLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIV 205
Query: 352 GFD-YDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIR 176
GFD Y P L+QT+PSG + WKANATGR++ ++REFLEKNY D E +KLAIR
Sbjct: 206 GFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KDTSGKE--TIKLAIR 262
Query: 175 ALLEVVQSGQKNLEIAVMRRGQPMQMLDLDTINSYVSVI 59
ALLEVV+SG KN+EIAVM ++ L+ I+ YV+ I
Sbjct: 263 ALLEVVESGGKNIEIAVMTHKDGLRELEEAEIDEYVAEI 301
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 198 bits (483), Expect = 2e-51
Identities = 99/159 (62%), Positives = 124/159 (77%), Gaps = 1/159 (0%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GL ADAR+LINRA++ECQSH+LTVED VT+EYITRYIAGL+QKYTQS G RPFG+S LI
Sbjct: 76 GLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIV 135
Query: 352 GFD-YDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIR 176
GFD Y P L+QT+PSG + WKANATGR++ ++REFLEKNY + + +KLAIR
Sbjct: 136 GFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY---KETSGKETIKLAIR 192
Query: 175 ALLEVVQSGQKNLEIAVMRRGQPMQMLDLDTINSYVSVI 59
ALLEVV+SG KN+EIAVM + ++ L+ I+ YV+ I
Sbjct: 193 ALLEVVESGGKNIEIAVMTQKDGLRQLEEAEIDEYVAEI 231
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 104 bits (249), Expect = 5e-23
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G+ D R+L+ +++ + Q + ++ + + + R A + Q++TQS G RPFG+S LI
Sbjct: 138 GMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIA 197
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D D P L+Q +PSG Y+ WKA+A G++ + FLEK YT D + A+ AI
Sbjct: 198 GYD-DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDD--AIHTAILT 254
Query: 172 LLEVV--QSGQKNLEIAVMRRGQPMQMLDLDTINSYVSVI 59
L E Q N+EI ++R + ++L I ++ +
Sbjct: 255 LKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFLEEV 294
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 104 bits (249), Expect = 5e-23
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G+ D R+L+ +++ + Q + ++ + + + R A + Q++TQS G RPFG+S LI
Sbjct: 101 GMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIA 160
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D D P L+Q +PSG Y+ WKA+A G++ + FLEK YT D + A+ AI
Sbjct: 161 GYD-DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDD--AIHTAILT 217
Query: 172 LLEVV--QSGQKNLEIAVMRRGQPMQMLDLDTINSYVSVI 59
L E Q N+EI V+R + ++L I ++ +
Sbjct: 218 LKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEV 257
>06_01_0539 + 3869156-3869908
Length = 250
Score = 91.9 bits (218), Expect = 3e-19
Identities = 44/127 (34%), Positives = 75/127 (59%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G+ +DA IL+N A++ Q + L+ ++P+ +E + + + KQ YTQ G RPFG+S L
Sbjct: 78 GIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFA 137
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D L+ ++PSG Y WKA A G +++ + L+++Y + T AV LA++
Sbjct: 138 GWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYR--DGMTREEAVALALKV 195
Query: 172 LLEVVQS 152
L + + S
Sbjct: 196 LSKTMDS 202
>06_01_0529 + 3831100-3831852
Length = 250
Score = 91.9 bits (218), Expect = 3e-19
Identities = 44/127 (34%), Positives = 75/127 (59%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G+ +DA IL+N A++ Q + L+ ++P+ +E + + + KQ YTQ G RPFG+S L
Sbjct: 78 GIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFA 137
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D L+ ++PSG Y WKA A G +++ + L+++Y + T AV LA++
Sbjct: 138 GWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYR--DGMTREEAVALALKV 195
Query: 172 LLEVVQS 152
L + + S
Sbjct: 196 LSKTMDS 202
>06_01_0479 + 3419657-3420337
Length = 226
Score = 91.9 bits (218), Expect = 3e-19
Identities = 44/127 (34%), Positives = 75/127 (59%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G+ +DA IL+N A++ Q + L+ ++P+ +E + + + KQ YTQ G RPFG+S L
Sbjct: 54 GIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFA 113
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D L+ ++PSG Y WKA A G +++ + L+++Y + T AV LA++
Sbjct: 114 GWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYR--DGLTREEAVALALKV 171
Query: 172 LLEVVQS 152
L + + S
Sbjct: 172 LSKTMDS 178
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 78.6 bits (185), Expect = 3e-15
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GLTADAR L+ +A+ E + + ++ + ++IA Q YTQ RP G+ ++
Sbjct: 82 GLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVL 141
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRA 173
G+D + + LF+ +P+G ++ KA + G + FLEK D + V++AI A
Sbjct: 142 GYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISA 201
Query: 172 LLEVVQSGQK--NLEIAVMRR-GQPMQMLDLDTINSYVSVI 59
L V+Q K +E+ V+R+ + + L + I+ +++ I
Sbjct: 202 LQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAI 242
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 76.6 bits (180), Expect = 1e-14
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGR---RPFGISC 362
GL ADAR L+ A++E Q+H+ + +P+T+E T+ I L ++ + + RPFG+S
Sbjct: 93 GLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSL 152
Query: 361 LIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 227
LI G D +G P L+ T+PSG +++ A A G ++ L++ Y
Sbjct: 153 LIAGHDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQY 196
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 68.5 bits (160), Expect = 3e-12
Identities = 36/117 (30%), Positives = 63/117 (53%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GL AD R +++RA+ E S++ +P++++ + +A T RPFG ++G
Sbjct: 88 GLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILG 147
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLA 182
G+D DG P L+ EPSG+ Y++ A G+ + + +EK E+ G V++A
Sbjct: 148 GYDRDG-PQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEK-LKLSELTCREGIVEVA 202
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 66.5 bits (155), Expect = 1e-11
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 9/156 (5%)
Frame = -3
Query: 508 LINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGSP 329
L ++AQ + +T+ P T +I + Q TQ + +RP+G+ L+ G D G+
Sbjct: 87 LADKAQPDMYIFGITI-CPTTFLWIMSVSLMVLQVCTQRSWKRPYGVGLLVAGLDESGA- 144
Query: 328 HLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRALLEVVQSG 149
HL+ PSG Y+E++A A G ++ + FLE+ + T +K A+ A+ E +Q G
Sbjct: 145 HLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQ-G 203
Query: 148 QK----NLEIAVMRRG-----QPMQMLDLDTINSYV 68
+K N +A++ R +P +M+D+ I +
Sbjct: 204 EKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEII 239
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/110 (30%), Positives = 57/110 (51%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
GL AD R +++RA+ E S++ +P+ ++ + +A T RPFG ++G
Sbjct: 80 GLAADGRQIVSRAKSEAASYEKVYGEPMPVKELADRVASYVHLCTLYWWLRPFGCGVILG 139
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATE 203
G+D DG P L+ EPSG+ Y++ A G+ + + + D+ A E
Sbjct: 140 GYDRDG-PQLYMIEPSGLSYKYFGAALGKGRQAAKTCVYDGSRKDDSAFE 188
>07_03_1256 -
25237465-25237590,25237833-25237918,25238025-25238083,
25238516-25238612,25239582-25239663,25239752-25240096
Length = 264
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = -3
Query: 532 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 353
G+ D R + A+ + ++ + ++IA Q TQ RP+G+ +I
Sbjct: 140 GMPGDGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIRTQHAQIRPYGVVSMIF 199
Query: 352 GFDYD-GSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEK 233
G D + G+P LF +P+G ++ KA + G K V FLE+
Sbjct: 200 GIDEEKGTPELFTCDPAGQFFAHKATSAGPKEKEVMNFLEE 240
>11_04_0445 + 17818190-17818874,17819730-17819749
Length = 234
Score = 31.1 bits (67), Expect = 0.58
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = -3
Query: 526 TADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRP--FGISCLIG 353
TA R+L + V + T+E + ++ G++ + Q R+P I CL+
Sbjct: 135 TAAIRMLAYGTPADLMDETFGVAESTTMECMINFVQGVRHIFGQQYLRKPNEQDIQCLLQ 194
Query: 352 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKN 230
+ G P + + +++EW+ + R+ LE N
Sbjct: 195 QGEAHGFPGMLGSLDC-MHWEWQNCPVAWKGQFTRDLLEHN 234
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 328 HLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTA 221
+LF +EP ++ KA++T R KT+ FLE+ A
Sbjct: 311 NLFHSEPGNGLWKRKADSTLRHCKTLESFLEETLDA 346
>02_05_0671 -
30769631-30769803,30770535-30770873,30770952-30771036,
30771229-30771369,30771802-30771873,30772183-30772302,
30772606-30772677,30772758-30772895,30773249-30773320,
30773609-30773685,30773761-30773837,30773960-30774077,
30774852-30774930
Length = 520
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 479 ITQVNSRGSSNIGVYYKIHSRSQTEIYSEQWSSTIWYFVFDR 354
I+ NS S +GV+ + + +Q Y++ S IW F+ DR
Sbjct: 417 ISPSNSCPSHYVGVFQDLPAGTQFPSYADDISRFIWNFLADR 458
>05_03_0394 -
13440871-13441098,13441197-13441394,13441491-13441594,
13441687-13442551,13442677-13443045,13443372-13443533,
13443838-13444056,13444138-13444656,13444742-13444819,
13446041-13446163
Length = 954
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -3
Query: 490 IECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISC--LIGGFDYDGSPHLFQ 317
+ C + ++ V+ L+ + + +G + + SN R P+G+SC L GS F+
Sbjct: 232 VVCPTDEVEVDYGADLD-TSMFSSGFSKLSSDSNRRDPYGLSCWNLNNLPRIPGSVLSFE 290
Query: 316 TEP-SGIYYEW 287
TE SG+ W
Sbjct: 291 TEDISGVVVPW 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,530
Number of Sequences: 37544
Number of extensions: 242807
Number of successful extensions: 541
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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